Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0612.Seq
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49060.1 68416.m05360 protein kinase family protein / U-box d... 27 5.1
At5g38320.1 68418.m04625 expressed protein ; expression support... 27 6.7
At5g58140.4 68418.m07274 protein kinase family protein / non pho... 27 8.9
At5g58140.3 68418.m07277 protein kinase family protein / non pho... 27 8.9
At5g58140.2 68418.m07276 protein kinase family protein / non pho... 27 8.9
At5g58140.1 68418.m07275 protein kinase family protein / non pho... 27 8.9
At4g10890.1 68417.m01772 expressed protein 27 8.9
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden... 27 8.9
>At3g49060.1 68416.m05360 protein kinase family protein / U-box
domain-containing protein contains Pfam profile: PF00069
Eukaryotic protein kinase domain
Length = 805
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 40 HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 174
H+W + + R+ N SN MPP++ ++ K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206
>At5g38320.1 68418.m04625 expressed protein ; expression supported
by MPSS
Length = 212
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 79 RSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 219
RSK + P +IPI + VL+ +I + Y + +P Y+S+
Sbjct: 85 RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132
>At5g58140.4 68418.m07274 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 689
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 281 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQL 421
LTE R+ IL N RFL+ TD +++ DA+ QR +QL
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKI---RDAIRDQREITVQL 456
>At5g58140.3 68418.m07277 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 281 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQL 421
LTE R+ IL N RFL+ TD +++ DA+ QR +QL
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKI---RDAIRDQREITVQL 456
>At5g58140.2 68418.m07276 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 281 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQL 421
LTE R+ IL N RFL+ TD +++ DA+ QR +QL
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKI---RDAIRDQREITVQL 456
>At5g58140.1 68418.m07275 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 281 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGAQMQL 421
LTE R+ IL N RFL+ TD +++ DA+ QR +QL
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKI---RDAIRDQREITVQL 456
>At4g10890.1 68417.m01772 expressed protein
Length = 527
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 77 RKTNISESICQRCFHQS-RTKVRGS 6
++T I +C RC+H S R K+R S
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHS 218
>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
(Plant J. 6, 379-387 (1994))
Length = 313
Score = 26.6 bits (56), Expect = 8.9
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +1
Query: 76 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPL*AL*FVQ 255
RRS + + N+ PP+ PI+H L KI+PR + + +S S L + +
Sbjct: 53 RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111
Query: 256 VKLSAHL 276
AHL
Sbjct: 112 KAAEAHL 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,303,166
Number of Sequences: 28952
Number of extensions: 175761
Number of successful extensions: 365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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