Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0611.Seq
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.37 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.37 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   4.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 270 VVL*FLIINWFWFYGRDRFSKRFLV---H***LLCCFFSVCWRFGLYCLCGFSKLFLVY 103
           V L  L+  ++++Y    F   F++   H   LLC ++  C    L C+  F + F+++
Sbjct: 250 VHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIF 308



 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 204 FLVH***LLCCFFSVCWRFGLYCLCGFSKLFLVY 103
           F VH   LLC ++ V   F L C+  F   F+++
Sbjct: 123 FTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIF 156



 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 353 LFSRSFLVC*FCFRR*YNVFGCVIYRRWLFCSF 255
           +F+  FL+C + F   + +  CV Y  + F  F
Sbjct: 91  IFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIF 123


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = +3

Query: 339 RSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAI 473
           ++ + P+ S+D  N++E +S I   +       + K P   +  +
Sbjct: 246 QTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLDKNPENTLGTM 290


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = +3

Query: 351 QPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAI 473
           QP  + + + T   E P   + T +PQ + + +   E   +
Sbjct: 402 QPTQTTESEPTQASEQPTESSTTQKPQTTKTPESGNESDGV 442


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 493 TDETDSVIADISPDGCLLTEN 431
           T+E  +  A +SP+G LL  N
Sbjct: 8   TEEDSAPEACVSPEGSLLPSN 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,036
Number of Sequences: 336
Number of extensions: 2222
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)