Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0611.Seq
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 29 0.38
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 28 0.66
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 28 0.66
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 28 0.66
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 28 0.88
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.2
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 27 1.5
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 27 2.0
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 3.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 4.7
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 4.7
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.38
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 351 QPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAITESVSS 491
QP S +E+ +N +TT + SK P+G S + E +S+
Sbjct: 106 QPLISQISSTNASVETQVNSVQTTNTTSNTSKAPNGLDSELNERLST 152
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 28.3 bits (60), Expect = 0.66
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 190 SMNQEPFGETIPTIEPEPIDNEKLQNNHRR 279
S+ Q+P G + P P + +K QNNH R
Sbjct: 518 SLAQQPIGHSTPHNSPSLLSVKKRQNNHIR 547
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 28.3 bits (60), Expect = 0.66
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +3
Query: 261 TEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFS 437
+ QPS+INH + I + SE N+E + + ++ + TT + +N ++ TE +F+
Sbjct: 697 SSQPSTINHGTDHINIVSE----NKETTVSLLHGDVEVEETTNV--ALNNSQDTETKFT 749
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 0.66
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 255 ETTEQPSSINHASKDIVLTSEAEL-ANQERSREQPNFSIDQK--NTTELESPINQTETT 422
+ T + + NH K L + ++ N+E + + D+K N T ES INQ ETT
Sbjct: 400 QQTSEVEANNHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEENNTAAESLINQEETT 458
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 27.9 bits (59), Expect = 0.88
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 267 QPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNT--TELESPINQTETTEPQFSV 440
Q SS HAS+ LTS+ + +Q+ P SI N + + + + +T P +
Sbjct: 274 QSSSYGHASQSTKLTSQRDNDHQKDLNFSPYKSIPLNNRPYSPMSEIVGFSGSTTPLDTY 333
Query: 441 SKQPSGE 461
+PSG+
Sbjct: 334 GNRPSGK 340
>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +3
Query: 291 SKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISA 470
+K++ L ++ L +ERS+ Q ++Q SP+ T+ +E + +S S EI+
Sbjct: 65 TKELKLLVDS-LQEKERSKLQATVKLEQLKVVSTNSPVENTQISELEARLSSL-SKEIND 122
Query: 471 ITESV 485
I +++
Sbjct: 123 ILQNM 127
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 366 IDQKNTTELESPINQTETTEPQFSVSKQPSGEISAITESVSS 491
IDQK SPI T+ T+ S K+ +S I E +S
Sbjct: 149 IDQKPIPWSSSPIEHTKLTKSMLSSEKRSKNHLSKIYEDHTS 190
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 26.6 bits (56), Expect = 2.0
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +3
Query: 255 ETTEQPSSINHASKDIVLTSEAELANQERSREQPNF--SIDQKNTTELES---PINQTET 419
E + PS+++ S V ++ A+Q R +F +KN T + P +++ T
Sbjct: 79 ENPDTPSNLDSPSTQNVGSTNNTRASQSLLRRSSSFFRRRHRKNGTHASTDNNPFSESST 138
Query: 420 TEPQFSVSKQPSGEISAITESVS 488
+PQ + SAITE+ +
Sbjct: 139 LQPQTAERTSQQAVRSAITETTN 161
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +3
Query: 375 KNTTELESPINQTETTEPQFSVSKQPSGEISAITESVSS 491
K E++SPI+ + +P ++S+QPS ++ T+SVS+
Sbjct: 11 KKKKEVKSPIDLPNSKKPTRALSEQPS---ASETQSVSN 46
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 385 VVFFWSMEKFGCSLDRSW 332
+V FW KFG +D SW
Sbjct: 875 LVLFWISSKFGNIIDASW 892
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 4.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 282 NHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGE 461
N+AS + L NQ S++QP S K T S ++ T++ F++S + E
Sbjct: 379 NYASSRNYPANPFFLQNQSTSQQQPERSSAVKTTPMKCSSLSNIYTSDLFFAISSSNTNE 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,859
Number of Sequences: 5004
Number of extensions: 34148
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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