Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0611.Seq
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0240 - 15246357-15246935,15247100-15247561                       30   1.2  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    30   1.2  
02_03_0106 + 15292869-15296138                                         29   1.5  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    29   2.7  

>11_04_0240 - 15246357-15246935,15247100-15247561
          Length = 346

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 297 DIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGE 461
           D +    ++  N+E   E PN +++++   E ++  NQ    E + S S+  +G+
Sbjct: 12  DTIAEGSSQYWNEEEGNEDPNQNLNEEGNVERDAEGNQEGNGEEEASGSQPSAGQ 66


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 331  FASSASDVNTMSLDA*FIDDGCSVVSHYQLVLVLWSG 221
            FAS+++ +   ++D   ID+GC+ +  + + L L SG
Sbjct: 3048 FASTSAAIKMQAIDVHVIDNGCNYIDKWFVALCLGSG 3084


>02_03_0106 + 15292869-15296138
          Length = 1089

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 294 KDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFS 437
           KD+ L  +A L  +++S ++     DQK T E E  +   + T  QFS
Sbjct: 725 KDLHLCEQAPLIEEQQSEQEQENQDDQKETEEEEKEV--LDVTNSQFS 770


>02_01_0689 +
           5137506-5137591,5138641-5138709,5139489-5139580,
           5139967-5140289,5141373-5142479,5142593-5143279,
           5144214-5144522,5145488-5145823,5146165-5146263,
           5146676-5146940,5146950-5147104,5147666-5149723,
           5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +3

Query: 294 KDIVLTSEAE--LANQERSREQPNFSIDQKNTTELESP-INQTET-TEPQFSVSKQP 452
           KD +L  EAE  +     + E   F +DQK+T  ++SP ++ T+  T P ++ S +P
Sbjct: 785 KDALLLVEAENLICKSSVNEESKVFMMDQKDTDMVDSPEVSATDNKTLPDWAKSLEP 841


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,185
Number of Sequences: 37544
Number of extensions: 190588
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)