Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0611.Seq
(493 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 28 3.6
SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8) 28 4.8
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4) 28 4.8
SB_50833| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.1e-08) 27 8.4
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 27 8.4
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 261 TEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
+E+ +++ S+D+ S + +A ++ E S+ + TT+LES +N+
Sbjct: 1756 SEKETALEKMSEDMQKQSRSRVAEMKKKAEAKISSVKNQLTTQLESKVNE 1805
>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1346
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 255 ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
E TE A++ T+EA A + + E+ N + K TTE + +T+TT+
Sbjct: 1260 EATEVAKETTKATEAATETTEATKAATKTTTEETNAAT--KTTTEATNAATETQTTQQMQ 1317
Query: 435 SV 440
SV
Sbjct: 1318 SV 1319
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 312 SEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPSGEISAITE 479
SE + AN+ E+P +++Q+ E + + T+P+ SVS P ++ + +
Sbjct: 1663 SEPQQANEVERTERPVITLEQERRVERIPAVPISVQTKPKKSVSDDPMLNLATLVD 1718
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 264 EQPSS-INHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSV 440
+QPS I + + TSE + E+P I +++ +E + ++ E +EP+
Sbjct: 1651 KQPSEQIEPEEEPVTQTSE-----ESEPEEEPMTQIPEESMSEAKPVVHIPEESEPEVKN 1705
Query: 441 SKQPSGEISAITESV 485
SKQ E ESV
Sbjct: 1706 SKQTPEESGPEVESV 1720
>SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)
Length = 235
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQP 452
E EL N ++ +Q + QKNT +++ + Q + + Q +QP
Sbjct: 150 EKEL-NMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQP 194
>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQP 452
E EL N ++ +Q + QKNT +++ + Q + + Q +QP
Sbjct: 42 EKEL-NMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQP 86
>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQP 452
E EL N ++ +Q + QKNT +++ + Q + + Q +QP
Sbjct: 41 EKEL-NMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQP 85
>SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)
Length = 167
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQP 452
E EL N ++ +Q + QKNT +++ + Q + + Q +QP
Sbjct: 82 EKEL-NMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQP 126
>SB_50833| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.1e-08)
Length = 280
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 264 EQPSSINHASKDIVLTSEAELANQERSREQPN 359
EQP+ ++ +KD+VL ++ L + R R PN
Sbjct: 113 EQPAVMSQCNKDLVLGADPRLRLEFRPRCDPN 144
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 4 PPXSTNQERSREMAPETAQRSVKVVEVTKVQSPINQEQF 120
PP +T + S AP AQ SVK++ +++S + + F
Sbjct: 603 PPTTTARPTSTAPAPRKAQLSVKLLRGAELRSSVKRVLF 641
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,924
Number of Sequences: 59808
Number of extensions: 244946
Number of successful extensions: 757
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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