Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0611.Seq
         (493 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071582-1|AAH71582.1| 1123|Homo sapiens USP36 protein protein.        31   1.6  
BC027992-1|AAH27992.1|  959|Homo sapiens USP36 protein protein.        31   1.6  
BC016487-1|AAH16487.1|  963|Homo sapiens Unknown (protein for IM...    31   1.6  
AK001671-1|BAA91825.1|  954|Homo sapiens protein ( Homo sapiens ...    31   1.6  
AB040886-1|BAA95977.1| 1123|Homo sapiens KIAA1453 protein protein.     31   1.6  
BC004369-1|AAH04369.1|  305|Homo sapiens APP protein protein.          30   3.8  
X69086-1|CAA48829.1| 3433|Homo sapiens utrophin (dystrophin rela...    29   6.6  
X15488-1|CAA33515.1|  490|Homo sapiens dystrophin-related protei...    29   6.6  
AL590704-1|CAI10894.1| 3433|Homo sapiens utrophin protein.             29   6.6  
AL590488-1|CAI16497.1| 3433|Homo sapiens utrophin protein.             29   6.6  
AL513475-2|CAI13033.1|  988|Homo sapiens utrophin protein.             29   6.6  
AL513475-1|CAI13032.1| 3433|Homo sapiens utrophin protein.             29   6.6  
AL513184-2|CAI40503.1|  988|Homo sapiens utrophin protein.             29   6.6  
AL513184-1|CAI40502.1| 3433|Homo sapiens utrophin protein.             29   6.6  
AL357149-2|CAI40389.1|  988|Homo sapiens utrophin protein.             29   6.6  
AL357149-1|CAI40388.1| 3433|Homo sapiens utrophin protein.             29   6.6  
AL024474-2|CAI23353.1| 3433|Homo sapiens utrophin protein.             29   6.6  

>BC071582-1|AAH71582.1| 1123|Homo sapiens USP36 protein protein.
          Length = 1123

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/79 (22%), Positives = 39/79 (49%)
 Frame = +3

Query: 255 ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
           ++T+ P +    +  +  + E   +    S+  P+   D K T +L+SP+    TTEP  
Sbjct: 622 DSTKAPQTPRSGAAHLCDSQETNCSTAGHSKTPPS-GADSK-TVKLKSPVLSNTTTEPAS 679

Query: 435 SVSKQPSGEISAITESVSS 491
           ++S  P+ +++   +  S+
Sbjct: 680 TMSPPPAKKLALSAKKAST 698


>BC027992-1|AAH27992.1|  959|Homo sapiens USP36 protein protein.
          Length = 959

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/79 (22%), Positives = 39/79 (49%)
 Frame = +3

Query: 255 ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
           ++T+ P +    +  +  + E   +    S+  P+   D K T +L+SP+    TTEP  
Sbjct: 622 DSTKAPQTPRSGAAHLCDSQETNCSTAGHSKTPPS-GADSK-TVKLKSPVLSNTTTEPAS 679

Query: 435 SVSKQPSGEISAITESVSS 491
           ++S  P+ +++   +  S+
Sbjct: 680 TMSPPPAKKLALSAKKAST 698


>BC016487-1|AAH16487.1|  963|Homo sapiens Unknown (protein for
           IMAGE:3924730) protein.
          Length = 963

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/79 (22%), Positives = 39/79 (49%)
 Frame = +3

Query: 255 ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
           ++T+ P +    +  +  + E   +    S+  P+   D K T +L+SP+    TTEP  
Sbjct: 622 DSTKAPQTPRSGAAHLCDSQETNCSTAGHSKTPPS-GADSK-TVKLKSPVLSNTTTEPAS 679

Query: 435 SVSKQPSGEISAITESVSS 491
           ++S  P+ +++   +  S+
Sbjct: 680 TMSPPPAKKLALSAKKAST 698


>AK001671-1|BAA91825.1|  954|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10809 fis, clone NT2RP4000927, weakly similar to
           UBIQUITIN CARBOXYL-TERMINAL HYDROLASE DUB-1 (EC
           3.1.2.15). ).
          Length = 954

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/79 (22%), Positives = 39/79 (49%)
 Frame = +3

Query: 255 ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
           ++T+ P +    +  +  + E   +    S+  P+   D K T +L+SP+    TTEP  
Sbjct: 622 DSTKAPQTPRSGAAHLCDSQETNCSTAGHSKTPPS-GADSK-TVKLKSPVLSNTTTEPAS 679

Query: 435 SVSKQPSGEISAITESVSS 491
           ++S  P+ +++   +  S+
Sbjct: 680 TMSPPPAKKLALSAKKAST 698


>AB040886-1|BAA95977.1| 1123|Homo sapiens KIAA1453 protein protein.
          Length = 1123

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/79 (22%), Positives = 39/79 (49%)
 Frame = +3

Query: 255 ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
           ++T+ P +    +  +  + E   +    S+  P+   D K T +L+SP+    TTEP  
Sbjct: 624 DSTKAPQTPRSGAAHLCDSQETNCSTAGHSKTPPS-GADSK-TVKLKSPVLSNTTTEPAS 681

Query: 435 SVSKQPSGEISAITESVSS 491
           ++S  P+ +++   +  S+
Sbjct: 682 TMSPPPAKKLALSAKKAST 700


>BC004369-1|AAH04369.1|  305|Homo sapiens APP protein protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 29  VLEKWHQKQHSGQSRW 76
           V EKW+++ HSGQ+RW
Sbjct: 287 VREKWYKEVHSGQARW 302


>X69086-1|CAA48829.1| 3433|Homo sapiens utrophin (dystrophin related
            protein) protein.
          Length = 3433

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276  SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
            S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 3304 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 3348


>X15488-1|CAA33515.1|  490|Homo sapiens dystrophin-related protein
           (490 AA) protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276 SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
           S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 361 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 405


>AL590704-1|CAI10894.1| 3433|Homo sapiens utrophin protein.
          Length = 3433

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276  SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
            S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 3304 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 3348


>AL590488-1|CAI16497.1| 3433|Homo sapiens utrophin protein.
          Length = 3433

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276  SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
            S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 3304 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 3348


>AL513475-2|CAI13033.1|  988|Homo sapiens utrophin protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276 SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
           S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 859 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 903


>AL513475-1|CAI13032.1| 3433|Homo sapiens utrophin protein.
          Length = 3433

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276  SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
            S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 3304 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 3348


>AL513184-2|CAI40503.1|  988|Homo sapiens utrophin protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276 SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
           S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 859 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 903


>AL513184-1|CAI40502.1| 3433|Homo sapiens utrophin protein.
          Length = 3433

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276  SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
            S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 3304 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 3348


>AL357149-2|CAI40389.1|  988|Homo sapiens utrophin protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276 SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
           S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 859 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 903


>AL357149-1|CAI40388.1| 3433|Homo sapiens utrophin protein.
          Length = 3433

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276  SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
            S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 3304 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 3348


>AL024474-2|CAI23353.1| 3433|Homo sapiens utrophin protein.
          Length = 3433

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 276  SINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQ 410
            S +H S+D  L +EA+L  Q + R +    I + +  +LES +++
Sbjct: 3304 SPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHR 3348


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,680,524
Number of Sequences: 237096
Number of extensions: 1175621
Number of successful extensions: 2794
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2794
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)