Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0611.Seq
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    33   0.11 
U29614-5|AAA68810.2|  240|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AC006810-1|AAF59633.1|  182|Caenorhabditis elegans Hypothetical ...    30   1.0  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   1.8  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81094-1|CAB03150.1|  784|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   9.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   9.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   9.8  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 258 TTEQPSSINHASK-DIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
           T +QP++  H S  ++  T+E       + + +   + ++  TTE  S   +  TTE   
Sbjct: 504 TNKQPTTSEHESTTEVPTTTEEPTTTTGQHKTEKAITTEEPTTTEESSTTEEVTTTEEPA 563

Query: 435 SVSKQPSGEISAITESVSS 491
           +    P+ E    TE  +S
Sbjct: 564 NTGNPPTTENPTTTEQPTS 582



 Score = 29.9 bits (64), Expect = 1.0
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +3

Query: 258 TTEQPSSINHASKD-IVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
           TTEQP+S   ++   +  T+E  +  +E +  + + +  QK TT  ES   +  +T  + 
Sbjct: 576 TTEQPTSTAESTTTALPFTTEQTVTTEEPTTAEKS-TATQKPTTTQESVSTEKTSTTKKA 634

Query: 435 SVSKQPSGEISAITESVSS 491
           S +++P+      T + SS
Sbjct: 635 STTEEPTTTDEPTTTTESS 653



 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 303 VLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSKQPS 455
           +LTS   L + + S      S D  NTTE+ SP+ +T TT    + S +PS
Sbjct: 175 LLTSPETLVSTDSSTSTEQTSPD--NTTEIASPM-ETNTTTEATTTSVEPS 222


>U29614-5|AAA68810.2|  240|Caenorhabditis elegans Hypothetical
           protein F18E9.4 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 258 TTEQPSSINHASKDIVLTSEAELANQERSREQPNFS---IDQKNTTELESPINQTETTEP 428
           TT  P  I+H+ + +  +    L +     E P+ +   I   + T ++S ++Q E    
Sbjct: 60  TTHDPLEISHSKRFLPQSGIENLVHPPLGGETPSVNEEPIITMSMTPIQS-LSQPEEISA 118

Query: 429 QFSVSKQPSGEISAITESV 485
           +FS S     E+SA TE V
Sbjct: 119 EFSKSSDAILEVSATTEKV 137


>AC006810-1|AAF59633.1|  182|Caenorhabditis elegans Hypothetical
           protein Y5H2B.3 protein.
          Length = 182

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 321 ELANQERSREQPNFSIDQKNTTELESPINQTETTEPQ 431
           E  N+E+S E+   S+ +K++ +LE+P  + + +E Q
Sbjct: 112 EQVNKEKSEEKKKESVKRKSSEKLEAPSKKAKNSEDQ 148


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of
           efl-1 mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 264 EQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPI 404
           EQP  I+  S D+    E E  + + + E+P    D++N  + E+P+
Sbjct: 478 EQPFMID-ISYDMPFEEEPEPRDDQEAHEEPEDESDERNPVDQEAPV 523


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 184 LLSMNQEPFGETIPTIEPEPIDNEKLQNNHR 276
           LL+ N  PF  T+P+  PEP+D E ++   +
Sbjct: 402 LLAPNWMPFS-TVPSKNPEPLDPEAIKKKEK 431


>Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical
           protein R10E4.3 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 252 IINWFWFYGRDRFSKRFLVH 193
           +I WFWFY RD      ++H
Sbjct: 35  LIAWFWFYPRDEPPNNQIMH 54


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
            T06D8.1b protein.
          Length = 3653

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = +3

Query: 255  ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
            E T  P+++  + ++  L+S + +  +    +Q   +  ++ TT   +  +  ETT P  
Sbjct: 1071 EETTVPTTVESSGEEPALSSTS-VPTELSKDDQVTEASGEETTTAAATEASSEETTTPAV 1129

Query: 435  SVSKQPSGEISAITE 479
            + +       SA+TE
Sbjct: 1130 TEASGEESTTSAVTE 1144


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = +3

Query: 255  ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
            E T  P+++  + ++  L+S + +  +    +Q   +  ++ TT   +  +  ETT P  
Sbjct: 1071 EETTVPTTVESSGEEPALSSTS-VPTELSKDDQVTEASGEETTTAAATEASSEETTTPAV 1129

Query: 435  SVSKQPSGEISAITE 479
            + +       SA+TE
Sbjct: 1130 TEASGEESTTSAVTE 1144


>Z81094-1|CAB03150.1|  784|Caenorhabditis elegans Hypothetical
           protein F58G11.1a protein.
          Length = 784

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 267 QPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVSK 446
           QP  +  ASK +   SE E   Q++  E     I   + T++ S + Q  +     S +K
Sbjct: 718 QPQGVYTASKQVPARSEQEGVEQKQQVENGPVGIPDVD-TKVTSTLQQNSSKTSSSSTTK 776

Query: 447 QPSGEISA 470
             S   SA
Sbjct: 777 STSDSKSA 784


>Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical
           protein F28D1.1 protein.
          Length = 580

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 167 KKQQSNYYQ*TRNRLEKRSRP*NQNQLIMRNYRTTIVDKSRIQRH 301
           KK + +    TRN+L+K+ RP  +N    R  +  ++ K +++RH
Sbjct: 39  KKMKQHTGGGTRNKLKKKQRPPTEN-TEGRAKKPKVLTKEQLERH 82


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
            protein T06D8.1b protein.
          Length = 3653

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = +3

Query: 255  ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
            E T  P+++  + ++  L+S + +  +    +Q   +  ++ TT   +  +  ETT P  
Sbjct: 1071 EETTVPTTVESSGEEPALSSTS-VPTELSKDDQVTEASGEETTTAAATEASSEETTTPAV 1129

Query: 435  SVSKQPSGEISAITE 479
            + +       SA+TE
Sbjct: 1130 TEASGEESTTSAVTE 1144


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = +3

Query: 255  ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
            E T  P+++  + ++  L+S + +  +    +Q   +  ++ TT   +  +  ETT P  
Sbjct: 1071 EETTVPTTVESSGEEPALSSTS-VPTELSKDDQVTEASGEETTTAAATEASSEETTTPAV 1129

Query: 435  SVSKQPSGEISAITE 479
            + +       SA+TE
Sbjct: 1130 TEASGEESTTSAVTE 1144


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 255  ETTEQPSSINHASKD-IVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETT 422
            + TE+P +    SK  +   +  E  N+E   E+P   + +K T + +S I++T  T
Sbjct: 9278 KVTEKPETAKLESKSKMTEDTTKESDNKETVDEKPKKKVLKKKTEKSDSTISETSET 9334


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 255  ETTEQPSSINHASKD-IVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETT 422
            + TE+P +    SK  +   +  E  N+E   E+P   + +K T + +S I++T  T
Sbjct: 9298 KVTEKPETAKLESKSKMTEDTTKESDNKETVDEKPKKKVLKKKTEKSDSTISETSET 9354


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 255  ETTEQPSSINHASKD-IVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETT 422
            + TE+P +    SK  +   +  E  N+E   E+P   + +K T + +S I++T  T
Sbjct: 9298 KVTEKPETAKLESKSKMTEDTTKESDNKETVDEKPKKKVLKKKTEKSDSTISETSET 9354


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
            protein T06D8.1b protein.
          Length = 3653

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = +3

Query: 255  ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
            E T  P+++  + ++  L+S + +  +    +Q   +  ++ TT   +  +  ETT P  
Sbjct: 1071 EETTVPTTVESSGEEPALSSTS-VPTELSKDDQVTEASGEETTTAAATEASSEETTTPAV 1129

Query: 435  SVSKQPSGEISAITE 479
            + +       SA+TE
Sbjct: 1130 TEASGEESTTSAVTE 1144


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
            protein T06D8.1a protein.
          Length = 3719

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = +3

Query: 255  ETTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQF 434
            E T  P+++  + ++  L+S + +  +    +Q   +  ++ TT   +  +  ETT P  
Sbjct: 1071 EETTVPTTVESSGEEPALSSTS-VPTELSKDDQVTEASGEETTTAAATEASSEETTTPAV 1129

Query: 435  SVSKQPSGEISAITE 479
            + +       SA+TE
Sbjct: 1130 TEASGEESTTSAVTE 1144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,044,924
Number of Sequences: 27780
Number of extensions: 200986
Number of successful extensions: 622
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)