Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0611.Seq
(493 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 26 0.25
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 1.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 1.8
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 3.1
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 4.1
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 7.1
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 7.1
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 7.1
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 7.1
AF388659-3|AAK71993.1| 548|Apis mellifera 1D-myo-inositol-trisp... 21 9.4
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 25.8 bits (54), Expect = 0.25
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 264 EQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTEL-ESPINQTETTEPQFSV 440
E+ S+N+A ++ T+ + + + ++ + S+ Q ++TEL + I+ +E S+
Sbjct: 489 EEFQSLNNAVGEMEATNVTNILSMDNTQYNLDLSLPQLDSTELADLDISLSENLSSGLSI 548
Query: 441 SKQPSGEIS 467
S E S
Sbjct: 549 SDSTKPETS 557
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.0 bits (47), Expect = 1.8
Identities = 5/16 (31%), Positives = 9/16 (56%)
Frame = -2
Query: 177 CCFFSVCWRFGLYCLC 130
CC++ +CW +C
Sbjct: 488 CCWWKICWTITTPAIC 503
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.0 bits (47), Expect = 1.8
Identities = 5/16 (31%), Positives = 9/16 (56%)
Frame = -2
Query: 177 CCFFSVCWRFGLYCLC 130
CC++ +CW +C
Sbjct: 541 CCWWKICWTITTPAIC 556
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.2 bits (45), Expect = 3.1
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 443
E E ERS+ + S D+ NT+ + + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNISKTVILSDKLESSDDIS 113
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 4.1
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPI---NQTETTEPQFSVSKQPSG 458
E E ERS+ + S D+ NT+ I N+ E+++ S+ + P G
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNKLESSD-DISLFRGPEG 120
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.0 bits (42), Expect = 7.1
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 443
E E ERS+ + S D+ NT+ + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDIS 113
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 7.1
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 443
E E ERS+ + S D+ NT+ + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDIS 113
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.0 bits (42), Expect = 7.1
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 443
E E ERS+ + S D+ NT+ + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPGSRDRSNTSNTSKTVILSDKLESSDDIS 113
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.0 bits (42), Expect = 7.1
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 443
E E ERS+ + S D+ NT+ + ++ E +S
Sbjct: 71 EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDIS 113
>AF388659-3|AAK71993.1| 548|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
Length = 548
Score = 20.6 bits (41), Expect = 9.4
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 270 PSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELE 395
PSS S ++ + + N+E+S+ + + D + +LE
Sbjct: 38 PSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLE 79
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,579
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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