Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0611.Seq
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 29 1.7
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 29 1.7
At2g40070.1 68415.m04923 expressed protein 29 2.2
At1g18700.1 68414.m02333 DNAJ heat shock N-terminal domain-conta... 28 3.0
At5g52330.1 68418.m06494 meprin and TRAF homology domain-contain... 28 3.9
At4g04400.1 68417.m00634 hypothetical protein contains Pfam prof... 27 5.2
At3g17690.1 68416.m02258 cyclic nucleotide-binding transporter 2... 27 5.2
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain... 27 9.1
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 27 9.1
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 27 9.1
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 27 9.1
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 261 TEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELE 395
TE+PS N SKD+ LTS L R+ E D++N E+E
Sbjct: 460 TEEPSKENDVSKDVNLTS--NLTEILRANEALEEIDDEENREEME 502
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 261 TEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELE 395
TE+PS N SKD+ LTS L R+ E D++N E+E
Sbjct: 460 TEEPSKENDVSKDVNLTS--NLTEILRANEALEEIDDEENREEME 502
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 288 ASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSVS 443
A KD L+ E+ + R +EQ N ++ N E E+P+ T P F++S
Sbjct: 29 AEKDEELSLFLEM--RRREKEQDNLLLNN-NPDEFETPLGSKHGTSPVFNIS 77
>At1g18700.1 68414.m02333 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI8
DnaJ homolog subfamily B member 7 Mus musculus; contains
Pfam profile PF00226 DnaJ domain
Length = 700
Score = 28.3 bits (60), Expect = 3.0
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +3
Query: 258 TTEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFS 437
+T+QP+ N S + + E +ER REQ ++N E E P + T+ EP+ +
Sbjct: 636 STQQPAQTNQPSPNQPADNVEEKKKKERKREQ-----RRRNAKEEEVPASITD-NEPKDA 689
Query: 438 VSKQPSGEIS 467
V SG S
Sbjct: 690 VQILSSGSDS 699
>At5g52330.1 68418.m06494 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 397
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 373 WSMEKFGCSLDRSWFASSASDVNTMSLDA*FIDDGCSVVSHYQLVL 236
W ++KF + + FASS ++ S +GC V +H L L
Sbjct: 23 WKIKKFS-QISKREFASSVFEIGGYSWHILMYPEGCDVSNHLSLFL 67
>At4g04400.1 68417.m00634 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 735
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 261 TEQPSSINHASKDIVLTSEAELANQERSREQPNFSIDQKNTTELESPINQTETTEPQFSV 440
TE+ S HA+ D VL + + + +Q + I +++ E+ +T TTE +
Sbjct: 626 TEEASQDGHATDDDVLFASPDGYVTTGNEQQRDIVISERSPEVAENSNKETNTTEKEVKG 685
Query: 441 SKQPSG 458
+ +G
Sbjct: 686 KAKKNG 691
>At3g17690.1 68416.m02258 cyclic nucleotide-binding transporter 2 /
CNBT2 (CNGC19) identical to cyclic nucleotide-binding
transporter 2 (CNBT2) GI:8131900 from [Arabidopsis
thaliana]; member of the cyclic nucleotide-gated channel
family (CNGC)- see PMID:11500563
Length = 743
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 387 ELESPINQTETTEPQFSVSKQPSGEISAITE 479
++ PI+ T TEP FS S Q S + S+ +
Sbjct: 50 QMSGPIHSTRRTEPLFSPSPQESPDSSSTVD 80
>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related low similarity to clathrin assembly
protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
profile PF01417: ENTH domain
Length = 591
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 315 EAELANQERSREQPNFSIDQKN---TTELESPINQTETTEPQ 431
E E QE+ EQP +++N TE + P+ + E EP+
Sbjct: 323 EKEEEEQEQEEEQPEEPAEEENQNENTENDQPLIEEEEEEPK 364
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 26.6 bits (56), Expect = 9.1
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +2
Query: 92 FSHQ*TR-NNLENPHKQ*SPNRQQTLKKQQSNYYQ*TRNRLEKRSRP*NQNQLIMRNYRT 268
FSH+ R ++ SP+R ++ K +S +R+R RSR +++ R+
Sbjct: 183 FSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRS 242
Query: 269 TIVDKSRIQRHCINV*SRTSKPR---TIER 349
SR R SR+ PR T+ER
Sbjct: 243 PAKSTSRSPRSRSRSKSRSLSPRGWVTVER 272
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 258 TTEQPSSINHASKDIVLTSEAELANQERSRE----QPNFSIDQKNTTELESPINQTETTE 425
TT Q ++N + + A+ AN E + QP S D + TT+ E NQ +
Sbjct: 969 TTNQAQNLNPSQFQAAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKNQRYQST 1028
Query: 426 PQFSVS 443
QF+ +
Sbjct: 1029 LQFAAN 1034
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 406 LIGDSSSVVFFWSMEKFGCSLDRSWFASS 320
+ GDSS+ WSME+F SL+ F S
Sbjct: 671 ITGDSSNEQREWSMERFNNSLEAKVFFGS 699
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,320,889
Number of Sequences: 28952
Number of extensions: 172384
Number of successful extensions: 461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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