Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0610.Seq
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   1.5  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   4.6  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   6.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   6.1  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 161 PDGPKCLYDLAEDSGLTTMH 102
           P+  KCLYD +ED+   TMH
Sbjct: 25  PETLKCLYDESEDNNNFTMH 44


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = +3

Query: 120  RILSQIV*ALRAIRNNELNSCFRRLLKP-FVSVRKFQEANKTGSDQ--SPD-STIGNHGN 287
            ++L   +  L  +   E+++  + LL+  F+  RK Q++ +TG+DQ  SP+ +T+  +  
Sbjct: 1577 QLLQIFILVLMRVTLKEISNKDKLLLQSIFLLSRKLQDSVQTGADQALSPEMNTVKKYVE 1636

Query: 288  NVSALHSVFAD 320
             +S L  ++ D
Sbjct: 1637 TISRLLDLYRD 1647


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 171 LNSCFRRLLKPFVSVRKFQEANKTGSDQSPDSTIGNHGNNVSA 299
           L S  RR     +S+ + Q+ N   S +SP   +    NNV+A
Sbjct: 44  LFSKLRRAKNGLISMTELQQKNVPPSSRSPRRRVAGVTNNVTA 86


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -2

Query: 251 IATGFISFLKLSNTYKWFEK---PSKAAVQFIVPDGPKCLYDLAEDSGLTTMHIYYVNQP 81
           +A  F  FL +  +   F +   P  AAV  IV  G   + D  ED   T + I+  N P
Sbjct: 112 VANLFFLFLVILQSISIFGEQVNPGLAAVPLIVVVGITAVKDAIEDFRRTMLDIHLNNTP 171

Query: 80  WL 75
            L
Sbjct: 172 TL 173


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -2

Query: 179 AVQFIVPDGP---KCLYDLAEDSGLTTMHIYYVNQPWLVSCL 63
           AV+ + P G    K LY L  +S   T H +Y+   WL   L
Sbjct: 102 AVRVLFPVGVQYIKELYTLLNESSNNTWHFHYIVLLWLSQAL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,148
Number of Sequences: 5004
Number of extensions: 47320
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)