Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0610.Seq
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0548 + 22004338-22006746                                         30   1.1  
04_01_0077 - 873711-874091,874569-874805                               28   4.6  
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467...    27   6.1  

>06_03_0548 + 22004338-22006746
          Length = 802

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 448 LGNRLQWYPSRNIHRCLMILLTETDFTKQACVPWMGRHYYYKMSA 314
           LGN ++ YP  ++H C  I L +++    A   W G+ Y Y  +A
Sbjct: 344 LGNDIRAYPHVSLHDCKKICLNDSNCVGFAY--WQGKGYCYPKTA 386


>04_01_0077 - 873711-874091,874569-874805
          Length = 205

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 164 VPDGPKCLYDLAEDSGLTTMHIYYVNQP 81
           +P+G +C  D A D+G T + I++ + P
Sbjct: 94  IPNGIRCYLDAAWDNGQTGIGIFFFHNP 121


>02_01_0623 -
           4676847-4676879,4676953-4677115,4677467-4677620,
           4678413-4678554,4678641-4678706,4679389-4679922
          Length = 363

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 96  LCQSTMVGQLPVAVKELGRR 37
           LCQ T + QLPV VK  G++
Sbjct: 245 LCQETRLDQLPVTVKVTGKK 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,256,189
Number of Sequences: 37544
Number of extensions: 302467
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)