Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0610.Seq
         (489 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           23   5.6  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   5.6  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    22   9.8  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    22   9.8  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    22   9.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    22   9.8  

>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 318 LRRRSAKLTHCY 283
           LR R  +LTHCY
Sbjct: 148 LRERQLQLTHCY 159


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 106 IVVSPESSAKSYKHLGPSGT 165
           I+  PE  AKSYK L  +GT
Sbjct: 445 ILAFPEVFAKSYKQLLEAGT 464


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 234 NKTGSDQSPDSTIGNHGNNVSALH 305
           N   S  + ++TI ++ NN ++LH
Sbjct: 203 NNNSSSNNNNNTISSNNNNNNSLH 226


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 234 NKTGSDQSPDSTIGNHGNNVSALH 305
           N   S  + ++TI ++ NN ++LH
Sbjct: 203 NNNSSSNNNNNTISSNNNNNNSLH 226


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 234 NKTGSDQSPDSTIGNHGNNVSALH 305
           N   S  + ++TI ++ NN ++LH
Sbjct: 155 NNNSSSNNNNNTISSNNNNNNSLH 178


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 310 SSQTSCSNNDAPSKEHRLA**NPSPLAISSS 402
           SS T   +  +PS  H L   + +PLA++SS
Sbjct: 706 SSPTGGHHLASPSPHHHLTSPHGAPLALTSS 736


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,452
Number of Sequences: 2352
Number of extensions: 12869
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)