Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0610.Seq
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK056408-1|BAB71178.1|  284|Homo sapiens protein ( Homo sapiens ...    31   1.6  
AL607035-3|CAI15908.1|  403|Homo sapiens novel protein (CGI-18) ...    31   2.1  
AK094170-1|BAC04299.1|  400|Homo sapiens protein ( Homo sapiens ...    31   2.1  
AK125519-1|BAC86191.1|  409|Homo sapiens protein ( Homo sapiens ...    29   6.5  

>AK056408-1|BAB71178.1|  284|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31846 fis, clone NT2RP7000425, weakly similar to
           MYOSIN HEAVY CHAIN, NONMUSCLE TYPE B. ).
          Length = 284

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 217 ESFRKLIKPVAINPRIQQSETMVTMCQLCTPSSQTS 324
           E  RK I+ +A +PR++ S  +   C+LC P S+ S
Sbjct: 217 EKLRKEIEGLAPSPRLECSSAISAHCKLCLPGSRHS 252


>AL607035-3|CAI15908.1|  403|Homo sapiens novel protein (CGI-18)
           protein.
          Length = 403

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 217 ESF--RKLIKPVAINPRIQQSETMVTMCQLCTPSSQTS 324
           ESF  R ++K  A+ PR++ ++ +   C LC P S  S
Sbjct: 341 ESFDGRNILKSFALLPRLEYNDAISAHCNLCLPGSSDS 378


>AK094170-1|BAC04299.1|  400|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36851 fis, clone ASTRO2014363. ).
          Length = 400

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 217 ESF--RKLIKPVAINPRIQQSETMVTMCQLCTPSSQTS 324
           ESF  R ++K  A+ PR++ ++ +   C LC P S  S
Sbjct: 338 ESFDGRNILKSFALLPRLEYNDAISAHCNLCLPGSSDS 375


>AK125519-1|BAC86191.1|  409|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43531 fis, clone PLACE7000514, moderately
           similar to Mus musculus mRNA for ER protein 58. ).
          Length = 409

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 229 KLIKPVAINPRIQQSETMVTMCQLCTPSSQ 318
           K  K   ++PR++ S T+ T C LC P S+
Sbjct: 372 KWAKSFTLSPRLECSGTISTHCNLCLPGSR 401


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,049,732
Number of Sequences: 237096
Number of extensions: 1715578
Number of successful extensions: 3019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3019
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)