Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0610.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81540-6|CAB04400.1|  128|Caenorhabditis elegans Hypothetical pr...    30   0.78 
Z81074-9|CAB03040.1|  223|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z68214-3|CAA92445.1|  399|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF077536-10|AAK31408.2|  229|Caenorhabditis elegans Hypothetical...    28   4.2  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>Z81540-6|CAB04400.1|  128|Caenorhabditis elegans Hypothetical
           protein F46B3.7 protein.
          Length = 128

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 265 QQSETMVTMCQLCTPSSQTSCSNNDAPS 348
           Q++E +   C  CTP+  TSC   + PS
Sbjct: 20  QETEPITPSCSACTPNYDTSCMGYNMPS 47


>Z81074-9|CAB03040.1|  223|Caenorhabditis elegans Hypothetical
           protein F32B6.4 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 345 WGVIITTRCLR--RRSAKLTHCYHGFRLLNP 259
           W VII  +  +  RR + L  CYH +R +NP
Sbjct: 172 WTVIINKQHTQMFRRLSDLVRCYHSYRYINP 202


>Z68214-3|CAA92445.1|  399|Caenorhabditis elegans Hypothetical
           protein C10C5.3 protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 174 NSCFRRLLKPFVSVRKFQEANKTGSDQSPDSTIGN 278
           N+   +L +   S RKF++  K   + +PD TIG+
Sbjct: 209 NTAMEKLERYLASARKFRDEQKALLESNPDLTIGD 243


>AF077536-10|AAK31408.2|  229|Caenorhabditis elegans Hypothetical
           protein C16A11.7 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 345 WGVIITTRCLR--RRSAKLTHCYHGFRLLNP 259
           W V+I  +  +  RR   L  CYH +R +NP
Sbjct: 178 WTVMINKQHTQMFRRLLDLVRCYHSYRFINP 208


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 265 QQSETMVTMCQLCTPSSQTSCSNN 336
           QQ +T  T  Q C P+  TSC+ +
Sbjct: 270 QQCQTRTTASQQCAPACSTSCNQS 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,270,579
Number of Sequences: 27780
Number of extensions: 264446
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)