Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0610.Seq
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03880.1 68416.m00401 expressed protein                             29   1.7  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   5.1  
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do...    27   9.0  

>At3g03880.1 68416.m00401 expressed protein 
          Length = 193

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 372 SLSKPVFLGWGVIITTRCLRRRSAKLTHCYHGFRLL 265
           SL + +FL WG     RCLR ++ K++   +  R L
Sbjct: 4   SLEQEIFLQWGNKKRLRCLRAKAKKISRSKNSSRFL 39


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 216 RKFQEANKTGSDQSPD-STIGNHGNNVSALHSV 311
           +KFQE        S D S +GNH +++S LH +
Sbjct: 100 KKFQENISVSVSSSSDVSIVGNHFDDLSELHGI 132


>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
           domain-containing protein low similarity to polyamine
           oxidase isoform-1 [Homo sapiens] GI:14860862; contains
           Pfam profiles PF01593: amine oxidase flavin-containing,
           PF04433: SWIRM domain
          Length = 1265

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 268 QSETMVTMCQLCTPSSQTSCSN 333
           +S T VT+CQ C  SS  + SN
Sbjct: 255 ESNTQVTLCQKCKYSSHHNASN 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,688,841
Number of Sequences: 28952
Number of extensions: 248019
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)