Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0608.Seq
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 140 7e-34
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 86 2e-17
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 79 2e-15
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566... 77 8e-15
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567... 76 1e-14
10_01_0343 - 3773274-3773390,3773476-3773637,3773758-3773853,377... 74 7e-14
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 71 7e-13
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 64 8e-11
03_01_0636 - 4664472-4664588,4664695-4664856,4664984-4665061,466... 51 6e-07
05_03_0648 + 16563147-16565557,16565655-16565850 29 1.5
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 28 3.5
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 28 4.6
10_08_0353 - 17101261-17102244 27 8.1
08_01_0798 + 7729150-7729328,7729744-7730182,7730653-7730754 27 8.1
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 27 8.1
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 140 bits (338), Expect = 7e-34
Identities = 60/77 (77%), Positives = 69/77 (89%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
LTDGG++Y+FECIGNV MR+ALE CHKGWG SVI+GVAA+G+EISTRPFQLVTGR WKG
Sbjct: 262 LTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKG 321
Query: 307 TAFGGYKSRESVPKLVD 257
TAFGG+KSR VP LV+
Sbjct: 322 TAFGGFKSRSQVPWLVE 338
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVV 141
YL K++ +DE+VTH++ L +IN+AF L+H G +R V+
Sbjct: 340 YLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVL 377
>02_05_0070 - 25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 85.8 bits (203), Expect = 2e-17
Identities = 35/77 (45%), Positives = 54/77 (70%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
LT+GG +Y+FEC+G+ G + AL++C GWG++V +GV A E+S L++GRT KG
Sbjct: 875 LTNGGADYSFECVGDTGVVSTALQSCSDGWGLTVTLGVPKAKPEVSAHYALLLSGRTLKG 934
Query: 307 TAFGGYKSRESVPKLVD 257
+ FGG++ + +P LVD
Sbjct: 935 SLFGGWRPKSDLPLLVD 951
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 79.0 bits (186), Expect = 2e-15
Identities = 33/77 (42%), Positives = 46/77 (59%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T+GG++ + EC GN+ M A E H GWGV+V++GV E T P + RT KG
Sbjct: 260 MTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKG 319
Query: 307 TAFGGYKSRESVPKLVD 257
T FG YK R +P +V+
Sbjct: 320 TFFGNYKPRTDLPNVVE 336
Score = 52.8 bits (121), Expect = 1e-07
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
Y++K+L +++F+TH+VP EIN AF LMH G+ IR ++ M
Sbjct: 338 YMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRM 377
>11_01_0688 -
5667539-5667655,5667792-5667953,5668084-5668179,
5668278-5668339,5668434-5668509,5668612-5668694,
5668807-5669132,5669741-5669787,5669900-5670036,
5670135-5670168
Length = 379
Score = 77.0 bits (181), Expect = 8e-15
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T+GGL+ EC GN+ M + E H GWGV+V++GV + T P + +T KG
Sbjct: 260 MTNGGLDRAVECTGNINAMISCFECVHDGWGVAVLVGVPTKDDVFKTHPMNFLNEKTLKG 319
Query: 307 TAFGGYKSRESVPKLVD 257
T FG YK R +P +V+
Sbjct: 320 TFFGNYKPRTDLPNVVE 336
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
Y++K+L L++F+TH+VP EIN AF LM G+S+R V+ M
Sbjct: 338 YMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCVMRM 377
>11_01_0689 -
5678227-5678343,5678475-5678636,5678751-5678846,
5679345-5679406,5679648-5679723,5679847-5679929,
5680525-5680853,5681402-5681448,5681707-5681843,
5682093-5682126
Length = 380
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T+GG++ + EC GN M +A E H GWGV+V++GVA T P + RT +G
Sbjct: 261 MTNGGVDRSVECTGNAAAMISAFECVHDGWGVAVLVGVAGKDAAFKTHPTNFLNERTLRG 320
Query: 307 TAFGGYKSRESVPKLVD 257
T FG YK R +P +V+
Sbjct: 321 TFFGNYKPRTDLPGVVE 337
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
Y+ K+L L++F+TH+VP EIN AF LM +G+S+R ++ M
Sbjct: 339 YMNKELELEKFITHSVPFSEINTAFDLMLSGESLRCIIRM 378
>10_01_0343 -
3773274-3773390,3773476-3773637,3773758-3773853,
3773956-3774009
Length = 142
Score = 73.7 bits (173), Expect = 7e-14
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+TDGG++Y+FEC G +R A + H GWG++V++G+ A + P +L GR G
Sbjct: 23 MTDGGVDYSFECTGITDVLREAFVSTHDGWGLTVVLGIHATPRMLPLHPMELFDGRRITG 82
Query: 307 TAFGGYKSRESVPKLVD 257
FG +K + +P++V+
Sbjct: 83 CVFGDFKGKSQLPEIVE 99
Score = 35.9 bits (79), Expect = 0.017
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 248 EKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVV 141
E + D F+T +P +IN+AF L+ GKS+R ++
Sbjct: 105 EININFDGFITQELPFADINKAFQLLEEGKSLRCLL 140
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 70.5 bits (165), Expect = 7e-13
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+TDGG +Y FECIG M A + +GWG ++I+GV G +S +++ G+ G
Sbjct: 187 MTDGGADYCFECIGLASVMSDAFRSSREGWGKTIILGVEMHGAPLSIPSLEILNGKCVMG 246
Query: 307 TAFGGYKSRESVPKLVD 257
+ FGG K ++ +P L D
Sbjct: 247 SLFGGVKPKQDIPILAD 263
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
YL K+L LD+F+TH VPLK+IN AF L+ GKS+R + M
Sbjct: 265 YLNKELELDKFITHEVPLKDINTAFDLLLQGKSLRCTIWM 304
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 63.7 bits (148), Expect = 8e-11
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = -2
Query: 478 GGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAF 299
GG +Y FECIG+ M A ++ GWG ++++GV+ IS +++ GR+ G+ F
Sbjct: 176 GGADYCFECIGSTSVMAEAFQSTRNGWGKTILLGVSGNKAPISIPSHEILRGRSVIGSLF 235
Query: 298 GGYKSRESVPKL 263
GG K + +P L
Sbjct: 236 GGIKPKNDIPML 247
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
YL+K+L L+EF+TH + +EIN AF L+ GKSIR ++ M
Sbjct: 251 YLDKELELEEFITHEMGFEEINRAFELLTQGKSIRCIIWM 290
>03_01_0636 -
4664472-4664588,4664695-4664856,4664984-4665061,
4665157-4665221,4665476-4665558,4666052-4666414,
4666512-4666555,4666632-4666765,4666881-4666917
Length = 360
Score = 50.8 bits (116), Expect = 6e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+TDGG +Y+FECIG M A G G ++I+GV + + F+ + G+ G
Sbjct: 247 MTDGGADYSFECIGISSVMTEA------GRGKTIILGVEKDSQPLCLPSFEFLFGKCVMG 300
Query: 307 TAFGGYKSRESVPKLVD 257
+ FGG K + +P L +
Sbjct: 301 SLFGGAKPKTDIPILAE 317
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 251 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
+ K+L L++ VTH V L EIN AF L+ GKS+R ++ M
Sbjct: 320 MNKELELEKLVTHEVGLTEINTAFDLLLQGKSLRCIIWM 358
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = +3
Query: 315 QVRPVTSWN-GRV--LISSPAAATPMIT 389
QVR T+W GRV L+ SPA+A P+IT
Sbjct: 423 QVRDTTAWTLGRVFELLHSPASANPIIT 450
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 294 PPKAVPFQVRPVTSWNGRVLISSPAAATPMITDTPHPLWQASSAALMV 437
PP P P S GRV + + AA + DTP +W L++
Sbjct: 88 PPPEAPPAASPSPS-GGRVRLYASAARAKYLVDTPEHIWGRLDEGLLL 134
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 209 VPLKEINEAFHLMHAGKSIRA 147
VP+KE EAF H G++IR+
Sbjct: 352 VPVKEFAEAFQSFHVGQAIRS 372
>10_08_0353 - 17101261-17102244
Length = 327
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 454 CIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
C+ G RA EA GW + ++ G+ A +E S F + W G
Sbjct: 204 CVAAAG--RAGAEADAGGWKLRMVAGLPAQTDESSCGLFAIKCMELWDG 250
>08_01_0798 + 7729150-7729328,7729744-7730182,7730653-7730754
Length = 239
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 373 AAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDDT 251
A G+ ST +K +GG K RE+ VDDT
Sbjct: 47 ATTGQSASTPTAPRACSPVFKAELYGGMKEREARSVTVDDT 87
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 144 YCTDRFSSMHQMECLIDLLQRHIVSDKFV 230
+C + S + C+ID L++ I SD+FV
Sbjct: 12 FCEEGSSESGYVLCVIDSLKKKITSDRFV 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,936,871
Number of Sequences: 37544
Number of extensions: 303392
Number of successful extensions: 819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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