Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0608.Seq
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)            146   6e-36
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          32   0.22 
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   4.7  
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               28   4.7  
SB_17162| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score =  146 bits (355), Expect = 6e-36
 Identities = 65/78 (83%), Positives = 71/78 (91%)
 Frame = -2

Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
           +TDGGL+YTFECIGNV TMR ALEACHKGWG SVIIGVAA G+EISTRPFQLVTGR WKG
Sbjct: 5   MTDGGLDYTFECIGNVHTMRQALEACHKGWGESVIIGVAAGGQEISTRPFQLVTGRVWKG 64

Query: 307 TAFGGYKSRESVPKLVDD 254
           TAFGGYKS + VP+LV+D
Sbjct: 65  TAFGGYKSGDGVPQLVED 82



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -1

Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 159
           YL  K+ +DEFVTHN+ L +INEAF LMH G+
Sbjct: 83  YLAGKVMVDEFVTHNMGLDKINEAFDLMHRGE 114


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -3

Query: 345 VHSNLLQVAPGREQLLE-VTKVEKVYQSL*MILGEEAAFRRICHSQC 208
           V  +LL++A GREQ ++ ++KV KVY+ L  ++G+ + F     S C
Sbjct: 409 VTKSLLEMAMGREQHVDCLSKVRKVYEVL-ALVGDSSRFPETIESTC 454


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +2

Query: 254 IIYKLWYTFSTFVTSKSCSLPGATCNKLEWTSADLFSSSSYTNDH*H 394
           + YK W  FS  +       P  TC        D+FS  ++  +H H
Sbjct: 603 VTYKSWRPFSYHLFQAHSDTPPITCPHCPKKFHDIFSFDNHQKEHRH 649


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -2

Query: 487  LTDGGLEYTFECIGNVGTMRAALEACHK--GWGVSVIIGVAAAGEEISTRPFQ 335
            +TD   E  +E  G VG  +   + CHK   W   ++  V         RPFQ
Sbjct: 950  VTDMKTEQCYEVFGEVGVKQYRCKICHKTSAWHTGIVYHVRV--HHTHERPFQ 1000


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 354 ISSPAAATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPSVN 488
           I +   ATP++T T     + S  AL+ P  P  S   S PP+ +
Sbjct: 216 IQTSQPATPIVTVTRCTDTKCSKPALVTPNIPRSSDTPSSPPATS 260


>SB_17162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 327 VTSWNGRVLISSPAAATPMITDTPHPLWQASS 422
           V+ W+  +L +S +   P++ + P P W ++S
Sbjct: 97  VSGWSTFILSNSCSPGDPLVLERPPPRWSSNS 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,114
Number of Sequences: 59808
Number of extensions: 354520
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)