Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0608.Seq
(488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 143 7e-35
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 143 7e-35
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 143 7e-35
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 143 7e-35
Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81484-6|CAB03968.2| 314|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 27 9.7
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 27 9.7
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 27 9.7
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 143 bits (346), Expect = 7e-35
Identities = 65/83 (78%), Positives = 71/83 (85%)
Frame = -2
Query: 481 DGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTA 302
DGG +YTFECIGNV TMR ALEA HKGWGVS IIGVA AG+EI+TRPFQLVTGRTWKGTA
Sbjct: 266 DGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTA 325
Query: 301 FGGYKSRESVPKLVDDTWRRSCL 233
FGG+KS ESVP+LVDD + L
Sbjct: 326 FGGWKSVESVPRLVDDYMNKKLL 348
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVV 141
Y+ KKL +DEF+TH + +IN AF ++H G+S+R+V+
Sbjct: 342 YMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVL 379
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 143 bits (346), Expect = 7e-35
Identities = 65/83 (78%), Positives = 71/83 (85%)
Frame = -2
Query: 481 DGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTA 302
DGG +YTFECIGNV TMR ALEA HKGWGVS IIGVA AG+EI+TRPFQLVTGRTWKGTA
Sbjct: 439 DGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTA 498
Query: 301 FGGYKSRESVPKLVDDTWRRSCL 233
FGG+KS ESVP+LVDD + L
Sbjct: 499 FGGWKSVESVPRLVDDYMNKKLL 521
Score = 40.3 bits (90), Expect = 7e-04
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRA 147
Y+ KKL +DEF+TH + +IN AF ++ G+ +R+
Sbjct: 515 YMNKKLLIDEFITHRCNIDDINAAFDVLRKGEGLRS 550
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 143 bits (346), Expect = 7e-35
Identities = 65/83 (78%), Positives = 71/83 (85%)
Frame = -2
Query: 481 DGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTA 302
DGG +YTFECIGNV TMR ALEA HKGWGVS IIGVA AG+EI+TRPFQLVTGRTWKGTA
Sbjct: 266 DGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTA 325
Query: 301 FGGYKSRESVPKLVDDTWRRSCL 233
FGG+KS ESVP+LVDD + L
Sbjct: 326 FGGWKSVESVPRLVDDYMNKKLL 348
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVV 141
Y+ KKL +DEF+TH + +IN AF ++H G+S+R+V+
Sbjct: 342 YMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVL 379
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 143 bits (346), Expect = 7e-35
Identities = 65/83 (78%), Positives = 71/83 (85%)
Frame = -2
Query: 481 DGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTA 302
DGG +YTFECIGNV TMR ALEA HKGWGVS IIGVA AG+EI+TRPFQLVTGRTWKGTA
Sbjct: 268 DGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTA 327
Query: 301 FGGYKSRESVPKLVDDTWRRSCL 233
FGG+KS ESVP+LVDD + L
Sbjct: 328 FGGWKSVESVPRLVDDYMNKKLL 350
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVV 141
Y+ KKL +DEF+TH + +IN AF ++H G+S+R+V+
Sbjct: 344 YMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVL 381
>Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical
protein F32A11.6 protein.
Length = 367
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +3
Query: 186 LIDLLQRHIVSDKFV*RQLLLQVXXXXXXXXXXXXXPPKA-VPFQVRPVTSWNGRVLISS 362
L ++ QRH ++D + + Q+ PP + Q P+ S + + S
Sbjct: 211 LYEVSQRHALAD--LRDHVESQIMTGNTRNSYNQQPPPMGGLEMQSSPMKSSSDSSHMRS 268
Query: 363 PAAATPMITDTPHPLWQASSAALMVP 440
P A T PHP W S++ +P
Sbjct: 269 PMAQMNCETTRPHPSWPLESSSFFLP 294
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 399 HPLWQASSAALMVPTF-PIHSKVYSRP 476
HP ++ASS ++ + F P H KV +P
Sbjct: 3298 HPAFEASSTSITIEAFDPSHEKVIKKP 3324
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 399 HPLWQASSAALMVPTF-PIHSKVYSRP 476
HP ++ASS ++ + F P H KV +P
Sbjct: 3287 HPAFEASSTSITIEAFDPSHEKVIKKP 3313
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 399 HPLWQASSAALMVPTF-PIHSKVYSRP 476
HP ++ASS ++ + F P H KV +P
Sbjct: 3287 HPAFEASSTSITIEAFDPSHEKVIKKP 3313
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 399 HPLWQASSAALMVPTF-PIHSKVYSRP 476
HP ++ASS ++ + F P H KV +P
Sbjct: 3298 HPAFEASSTSITIEAFDPSHEKVIKKP 3324
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 399 HPLWQASSAALMVPTF-PIHSKVYSRP 476
HP ++ASS ++ + F P H KV +P
Sbjct: 3287 HPAFEASSTSITIEAFDPSHEKVIKKP 3313
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 399 HPLWQASSAALMVPTF-PIHSKVYSRP 476
HP ++ASS ++ + F P H KV +P
Sbjct: 3287 HPAFEASSTSITIEAFDPSHEKVIKKP 3313
>Z81484-6|CAB03968.2| 314|Caenorhabditis elegans Hypothetical
protein C47A10.3 protein.
Length = 314
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -1
Query: 206 PLKEINEAFHLMHAGKSIRAVVDM*FLRKNIYTIFVHLLNLFSSAFTTSIIKIHNMHFVY 27
P +N + L + +IRA+ RK I+ ++ H L L S ++ + + VY
Sbjct: 133 PFFLLNYIYSLTYYIPTIRAIPSQEIGRKEIFKLYPHFLELDSQEHPAFVVTLGDPLIVY 192
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 43 LCILIILVVNAEEKRFNKCTKIV*IFFLRNYM 138
+C++++ +V A NK K+ IFFL +YM
Sbjct: 340 MCVVLVFLVGA----MNKIAKLTSIFFLLSYM 367
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 43 LCILIILVVNAEEKRFNKCTKIV*IFFLRNYM 138
+C++++ +V A NK K+ IFFL +YM
Sbjct: 443 MCVVLVFLVGA----MNKIAKLTSIFFLLSYM 470
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 43 LCILIILVVNAEEKRFNKCTKIV*IFFLRNYM 138
+C++++ +V A NK K+ IFFL +YM
Sbjct: 456 MCVVLVFLVGA----MNKIAKLTSIFFLLSYM 483
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,419
Number of Sequences: 27780
Number of extensions: 267185
Number of successful extensions: 709
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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