Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0608.Seq
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.25 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.25 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.25 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.3  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 251 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 150
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 251 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 150
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 251 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 150
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 396 PHPLWQASSAALMVPTFPIHSKVYSR 473
           PH  WQ S+A L+   F   ++V  R
Sbjct: 105 PHMAWQLSTAHLLAQLFLKSTEVTPR 130


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 350 HSSIPTCYRSHLEGNSFW 297
           H+ IPTC    +   SFW
Sbjct: 250 HTYIPTCLIVIMSWVSFW 267


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 442 VGTMRAALEACHKGWGV 392
           +  +R  ++AC + WGV
Sbjct: 110 INIIRVRVDACDRLWGV 126


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 351 LISSPAAATPMITDTPHPLWQASSAALMVPTFP 449
           +++  A+ T +  +TP  L   S+ A   PT P
Sbjct: 23  VVAGAASLTLVKAETPEHLAGTSTTAAATPTPP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,618
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)