Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0608.Seq
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43940.1 68418.m05376 alcohol dehydrogenase class III / gluta... 140 3e-34
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar... 80 9e-16
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar... 80 9e-16
At1g77120.1 68414.m08982 alcohol dehydrogenase (ADH) identical t... 77 5e-15
At1g32780.1 68414.m04041 alcohol dehydrogenase, putative similar... 72 2e-13
At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar... 66 9e-12
At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar... 65 3e-11
At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar... 63 8e-11
At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar... 63 1e-10
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar... 58 4e-09
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar... 58 4e-09
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 32 0.18
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf... 28 3.9
At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put... 27 6.8
At3g12090.1 68416.m01505 senescence-associated family protein si... 27 6.8
At5g66000.1 68418.m08309 expressed protein 27 9.0
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 27 9.0
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 27 9.0
At4g34990.1 68417.m04961 myb family transcription factor (MYB32)... 27 9.0
>At5g43940.1 68418.m05376 alcohol dehydrogenase class III /
glutathione-dependent formaldehyde dehydrogenase /
GSH-FDH (ADHIII) identical to gi:1143388
Length = 379
Score = 140 bits (340), Expect = 3e-34
Identities = 61/77 (79%), Positives = 69/77 (89%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
LTDGG++Y+FECIGNV MRAALE CHKGWG SVI+GVAA+G+EISTRPFQLVTGR WKG
Sbjct: 260 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKG 319
Query: 307 TAFGGYKSRESVPKLVD 257
TAFGG+KSR VP LV+
Sbjct: 320 TAFGGFKSRTQVPWLVE 336
Score = 50.4 bits (115), Expect = 6e-07
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVD 138
Y+ K++ +DE++THN+ L EIN+AF L+H G +R V+D
Sbjct: 338 YMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLD 376
>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 352
Score = 79.8 bits (188), Expect = 9e-16
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T GG +++FEC+G+ G AL++C GWG++V +GV A E+S ++G++ KG
Sbjct: 233 MTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKPEVSAHYGLFLSGKSLKG 292
Query: 307 TAFGGYKSRESVPKLVD 257
T FGG+K + +P L+D
Sbjct: 293 TLFGGWKPKSDLPSLID 309
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
Y+ K++ +DEF+THN+ EIN+AF LM GK +R V+ M
Sbjct: 311 YMNKEIMIDEFITHNLSFDEINKAFVLMREGKCLRCVLHM 350
>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 381
Score = 79.8 bits (188), Expect = 9e-16
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T GG +++FEC+G+ G AL++C GWG++V +GV A E+S ++G++ KG
Sbjct: 262 MTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKPEVSAHYGLFLSGKSLKG 321
Query: 307 TAFGGYKSRESVPKLVD 257
T FGG+K + +P L+D
Sbjct: 322 TLFGGWKPKSDLPSLID 338
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
Y+ K++ +DEF+THN+ EIN+AF LM GK +R V+ M
Sbjct: 340 YMNKEIMIDEFITHNLSFDEINKAFVLMREGKCLRCVLHM 379
>At1g77120.1 68414.m08982 alcohol dehydrogenase (ADH) identical to
alcohol dehydrogenase GI:469467 from (Arabidopsis
thaliana)
Length = 379
Score = 77.4 bits (182), Expect = 5e-15
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+TDGG++ + EC G+V M A E H GWGV+V++GV + + T P + RT KG
Sbjct: 260 MTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKDDAFKTHPMNFLNERTLKG 319
Query: 307 TAFGGYKSRESVPKLVD 257
T FG YK + +P +V+
Sbjct: 320 TFFGNYKPKTDIPGVVE 336
Score = 49.6 bits (113), Expect = 1e-06
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
Y+ K+L L++F+TH VP EIN+AF M G+SIR ++ M
Sbjct: 338 YMNKELELEKFITHTVPFSEINKAFDYMLKGESIRCIITM 377
>At1g32780.1 68414.m04041 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase GB:CAA37333 GI:297178 from
[Solanum tuberosum]; contains Pfam zinc-binding
dehydrogenase domain PF00107
Length = 394
Score = 72.1 bits (169), Expect = 2e-13
Identities = 28/73 (38%), Positives = 44/73 (60%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T GG++Y+FEC GNV +R A + H GWG +V++G+ + P +L GR G
Sbjct: 271 ITGGGVDYSFECTGNVDVLREAFLSTHVGWGSTVLVGIYPTPRTLPLHPMELFDGRRITG 330
Query: 307 TAFGGYKSRESVP 269
+ FGG+K + +P
Sbjct: 331 SVFGGFKPKSQLP 343
Score = 37.5 bits (83), Expect = 0.005
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = -1
Query: 233 LDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
L+ F+T+ +P ++IN+AF L+ GKS+R ++ +
Sbjct: 356 LEPFITNELPFEKINDAFQLLRDGKSLRCILQI 388
>At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase GI:551257 from [Nicotiana tabacum]
Length = 396
Score = 66.5 bits (155), Expect = 9e-12
Identities = 27/73 (36%), Positives = 48/73 (65%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T+GG+EY+FEC G++ +R A + + G GV+V++GV A+ + + P +L GR+
Sbjct: 279 ITEGGVEYSFECAGSIEALREAFLSTNSGVGVTVMLGVHASPQLLPIHPMELFQGRSITA 338
Query: 307 TAFGGYKSRESVP 269
+ FGG+K + +P
Sbjct: 339 SVFGGFKPKTQLP 351
Score = 41.1 bits (92), Expect = 4e-04
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = -1
Query: 251 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
L+ L LD F++H +P +INEA L+H GK++R ++ +
Sbjct: 358 LQGLLNLDLFISHQLPFHDINEAMQLLHQGKALRCLLHL 396
>At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 390
Score = 64.9 bits (151), Expect = 3e-11
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLV-TGRTWK 311
+TDGG +Y FEC+G+ ++ A C +GWG ++ +GV G +I F ++ G+
Sbjct: 271 MTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPGSQICLDSFDVLHHGKILM 330
Query: 310 GTAFGGYKSRESVPKLV 260
G+ FGG K++ +P L+
Sbjct: 331 GSLFGGLKAKTHIPILL 347
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
YL +L LD+FVTH + +EIN+AF L+ GK IR V+ M
Sbjct: 350 YLSNELELDKFVTHEMKFEEINDAFQLLLEGKCIRCVLWM 389
>At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 386
Score = 63.3 bits (147), Expect = 8e-11
Identities = 30/77 (38%), Positives = 44/77 (57%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+TD G +Y+FECIG M A ++ G G ++++G+ IS + L+ GRT G
Sbjct: 267 MTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKALPISLGSYDLLRGRTVCG 326
Query: 307 TAFGGYKSRESVPKLVD 257
T FGG K + +P LVD
Sbjct: 327 TLFGGLKPKLDIPILVD 343
Score = 47.6 bits (108), Expect = 4e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
YL+K+L L++ +TH + +EIN+AFHL+ G SIR ++ M
Sbjct: 345 YLKKELNLEDLITHELSFEEINKAFHLLAEGNSIRCIIWM 384
>At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 388
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T+GG++Y+FEC+G + A + G G +V++G+ IS F L+ GR G
Sbjct: 269 MTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICG 328
Query: 307 TAFGGYKSRESVPKLVD 257
+ FGG KS+ +P LVD
Sbjct: 329 SLFGGLKSKLDIPILVD 345
Score = 49.2 bits (112), Expect = 1e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
YL+K+L LD F+TH + KEIN+AF L+ GKS+R ++ M
Sbjct: 347 YLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWM 386
>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 57.6 bits (133), Expect = 4e-09
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T GG++Y+FEC+G + A + G G +V++G+ +S F L+ GR G
Sbjct: 270 MTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCG 329
Query: 307 TAFGGYKSRESVPKLVD 257
+ FGG K + +P LVD
Sbjct: 330 SLFGGLKPKLDIPILVD 346
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
YL+K+L LD F+TH + +EIN+AF L+ GKS+R ++ M
Sbjct: 348 YLKKELNLDSFITHELKFEEINKAFDLLVQGKSLRCILWM 387
>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 57.6 bits (133), Expect = 4e-09
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -2
Query: 487 LTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 308
+T GG++Y+FEC+G + A + G G +V++G+ +S F L+ GR G
Sbjct: 270 MTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCG 329
Query: 307 TAFGGYKSRESVPKLVD 257
+ FGG K + +P LVD
Sbjct: 330 SLFGGLKPKLDIPILVD 346
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1
Query: 254 YLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 135
YL+K+L LD F+TH + +EIN+AF L+ GKS+R ++ M
Sbjct: 348 YLKKELNLDSFITHELKFEEINKAFDLLVQGKSLRCILWM 387
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 32.3 bits (70), Expect = 0.18
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -2
Query: 487 LTDG-GLEYTFECIGNVGT-MRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTW 314
+T G G++ E +G T M+ L K G +V+IG++ AG +LV + W
Sbjct: 309 ITGGMGVDVAVEALGKPQTFMQCTLSV--KDGGKAVMIGLSQAGSVGEIDINRLVRRKVW 366
Query: 313 KGTAFGGYKSRESVPKLV 260
++GG ++R+ +PK+V
Sbjct: 367 VIGSYGG-RARQDLPKVV 383
>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
PF03637: Mob1/phocein family; contains Pfam F00560:
Leucine Rich Repeats; contains TIGRFAMS profile
TIGR01612: reticulocyte binding protein; hypothetical
protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
Length = 1405
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 374 SCCWRRDQHSSIPTCYRSHLEGNSF 300
S C RDQ S I C S EG+SF
Sbjct: 907 SSCIERDQWSQIKECLTSKSEGSSF 931
>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
putative similar to S(+)-beta-hydroxybutyryl CoA
dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
[Paracoccus denitrificans] GI:12003356; contains Pfam
profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
C-terminal
Length = 294
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 224 FVTHNVPLKEINEAFHLMHAGKSIRAVVD 138
FV + + + INEAFH ++ G + + +D
Sbjct: 188 FVVNRILMPMINEAFHTLYTGVATKEDID 216
>At3g12090.1 68416.m01505 senescence-associated family protein
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855
Length = 282
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 299 KSCSLPGATCNKLE-WTSADLF 361
+SC L TC K+E WT+ D F
Sbjct: 135 RSCILSSKTCTKIESWTTLDYF 156
>At5g66000.1 68418.m08309 expressed protein
Length = 215
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 398 GCVSDHWCSCCWRRDQHSSIPTCYRSHL 315
G VS+ SC + D ++PTC R L
Sbjct: 139 GIVSNSSSSCQHKNDDQCAVPTCSRERL 166
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Frame = -2
Query: 319 TWKGTAFG--GYK--SRESVPKLVDDTW 248
TW FG G+K +RE VP+ VDD+W
Sbjct: 106 TWGYGGFGALGHKVYTRELVPRRVDDSW 133
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Frame = -2
Query: 319 TWKGTAFG--GYK--SRESVPKLVDDTW 248
TW FG G+K +RE VP+ VDD+W
Sbjct: 175 TWGYGGFGALGHKVYTRELVPRRVDDSW 202
>At4g34990.1 68417.m04961 myb family transcription factor (MYB32)
similar to myb DNA-binding protein GI:19052 from
[Hordeum vulgare]
Length = 274
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 395 CVSDHWCSCCWRRDQHSSIPTCYRSHLEG--NSFWRLQK*RKCTKACR 258
C DH W +++ + + ++H EG S R ++C K+CR
Sbjct: 7 CEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCR 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,387
Number of Sequences: 28952
Number of extensions: 241391
Number of successful extensions: 638
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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