Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0604.Seq
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    29   0.28 
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    28   0.64 
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   3.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   3.4  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    25   4.5  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   7.9  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   7.9  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   7.9  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   7.9  

>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 257 MPESSTRHNRYRLGR-RSSTKSL 192
           +PE+ST HN+Y LG   SST SL
Sbjct: 84  IPENSTLHNKYELGAVESSTSSL 106


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -1

Query: 209 SSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKR 60
           SS++  +  R  ++ CIG  ++   +  SSD +GRR  +  +Q   F+ +
Sbjct: 274 SSSQITKEIRDINFNCIGPYLSKIARKLSSDFEGRRQAKTVNQIRDFVSK 323


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 351 CHILILGSCFQIFFSNI 401
           CH  +L +C  I+FSN+
Sbjct: 35  CHYRVLPACLNIYFSNL 51


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 273 IRLHTDARIINSAQPLSAWSSILN 202
           IR+H    I+   QP+S W+ +L+
Sbjct: 754 IRIHVIGDILKLPQPISTWNKLLD 777


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 432 DDMIVAKDGLRYLKKISESKILESEYG 352
           DD+ +  DG+ YL +I   +IL   +G
Sbjct: 124 DDIEIKPDGILYLPEIKYRRILNKAFG 150


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 471 VSPLFYPNFFSHPDDMIVAKD 409
           ++ +F P   SHPD  + +KD
Sbjct: 206 LAAIFQPGILSHPDHEVYSKD 226


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 375 KILESEYGIELDPEATDECSETSEDWSD 292
           ++LE+EY  E+D     +     EDW+D
Sbjct: 267 ELLEAEYENEMDRVLQMQIGGPEEDWND 294


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 264 AIGSCTPSSHLTSLLRSHYTHQSLRDLVLCHILI 365
           +I  C P+S+L +L  + YT   L  L+L  I +
Sbjct: 480 SIQFCKPASNLLTLKDNSYTQIPLEPLLLAEISV 513


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 465 PLFYPNFFSHPDD 427
           P+ YP F  HP+D
Sbjct: 706 PILYPQFLMHPED 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,731
Number of Sequences: 5004
Number of extensions: 36934
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)