Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0604.Seq
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 49 2e-06
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 49 2e-06
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 48 5e-06
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 47 7e-06
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 46 2e-05
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 45 3e-05
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 44 5e-05
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 30 1.1
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571... 29 1.5
03_02_0715 + 10621789-10623243,10624074-10625018 29 1.9
01_06_0506 + 29887343-29887686,29889965-29890265,29890385-298906... 28 3.4
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 27 7.8
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD Q +V G+ GLRVID S + P NPQA +MM+
Sbjct: 534 HYHGGCHVGKVVDQQYRVIGVSGLRVIDGSTLFRSPGTNPQATVMMM 580
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD +V+G+ GLRVID+S P NPQA +MM+
Sbjct: 525 HYHGGCHVGAVVDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMML 571
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 47.6 bits (108), Expect = 5e-06
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAE-RGAAFIKDTH 71
H G +G VVD +V G+ GLRV+D+S P NPQA +MM+ G K+
Sbjct: 524 HYHGGCHVGAVVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMMLGRYMGLKIQKERW 583
Query: 70 S*ND 59
+ ND
Sbjct: 584 TRND 587
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD Q +V G+ G+RV+D S P NPQA +MM+
Sbjct: 520 HYHGGCHVGKVVDQQHRVLGVSGVRVVDGSTFSRSPGTNPQATVMMM 566
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAERGAAFIKDTHS 68
H G + VVD + +V G+ LRVID S + P NPQA +MM+ I++
Sbjct: 522 HYHGGCQVNRVVDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMMLGRYMGVKIQNERL 581
Query: 67 *NDG 56
N+G
Sbjct: 582 GNEG 585
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/47 (46%), Positives = 27/47 (57%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD +V GI LRVID S + P NPQA +MM+
Sbjct: 515 HYHGGCQVGRVVDRDYRVLGIEALRVIDGSTFNASPGTNPQATVMML 561
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 44.4 bits (100), Expect = 5e-05
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAER-GAAFIKDTH 71
H G G VVD +V+ + LRV+D S P NPQA IMM+ G I + H
Sbjct: 518 HYHGGCVAGSVVDRDFRVFRVRALRVVDGSTFRETPGTNPQATIMMMGRYIGQKMIDERH 577
Query: 70 S 68
S
Sbjct: 578 S 578
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 143 ADGQSPSSDHDGRRARRGFHQRHSFLKRR 57
A GQSP + GRR H+RHS ++R
Sbjct: 61 AQGQSPMNPQHGRRQEADPHRRHSLSQQR 89
>09_03_0166 +
12956794-12956832,12956936-12956977,12957084-12957149,
12957237-12957350,12957435-12957515,12957613-12957690,
12958702-12958784,12959645-12959726,12959801-12959901,
12960016-12960055,12960162-12960221,12960302-12960348,
12960437-12960575,12960716-12960931,12961010-12961344,
12961525-12961596,12962449-12962589,12962680-12962716,
12962837-12963256
Length = 730
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -3
Query: 462 LFYPNFFSHPDDM---IVAKDG-LRYLKKISESKILESEYGIELDPEATDECSETSEDWS 295
++ P ++ P+ + +V KDG ++ K+ + +E YGI L + E E W
Sbjct: 654 IYLPRLYNWPETIHVDLVTKDGETTFVPKLQGANTMEDTYGIHLCSYELGQQQEAREFWG 713
Query: 294 DDWME 280
+ +E
Sbjct: 714 TERVE 718
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 366 ESEYGIELDPEATDECSETSEDWSDDWME 280
E E ++ DPE DE E ED DD +E
Sbjct: 186 EEEEDVDFDPEVEDEEEEDFEDEEDDELE 214
>01_06_0506 +
29887343-29887686,29889965-29890265,29890385-29890677,
29890783-29891069,29891171-29891400
Length = 484
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2
Query: 229 AIG-LVVDPQLKVYGIGGLRVIDASVMPSQPTGN---PQAAIMMVAERGAAFIKDT 74
A+G VVD + V+G G +++I+A V P GN P A+++ A+ T
Sbjct: 166 AVGNAVVDDKYLVFGAGSMQLINALVYALSPDGNADSPPASVVATVPYYPAYKSQT 221
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 27.1 bits (57), Expect = 7.8
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -2
Query: 265 AH*CQNHQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAERGAAF 86
AH + ++G TA VD + + + L V D SV+P+ NP I VA A
Sbjct: 720 AHHMGSCRMGATAGDGAVDARGESWEAERLYVCDGSVLPTAVGVNPMITIQSVAYCLANG 779
Query: 85 IKDTHS 68
I D+ S
Sbjct: 780 IADSLS 785
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,072
Number of Sequences: 37544
Number of extensions: 251624
Number of successful extensions: 722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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