Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0604.Seq
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)           57   9e-09
SB_2678| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.091
SB_11739| Best HMM Match : DUF1545 (HMM E-Value=3.6)                   31   0.49 
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         29   2.6  
SB_683| Best HMM Match : zf-C2H2 (HMM E-Value=0.85)                    28   4.5  
SB_4939| Best HMM Match : 7tm_1 (HMM E-Value=0.049)                    28   4.5  
SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_21899| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)                    27   6.0  
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)                        27   6.0  
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_42193| Best HMM Match : DUF1168 (HMM E-Value=0.4)                   27   7.9  
SB_34212| Best HMM Match : EGF (HMM E-Value=1.1e-05)                   27   7.9  
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)                 27   7.9  

>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
          Length = 79

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
 Frame = -2

Query: 247 HQLGTTAIG----LVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAERGAAFI 83
           H +GT  +G     VVD +L+V G+ GLR++DAS+MP+  +GN  +  +M+AE+ AAFI
Sbjct: 18  HPVGTCKMGQDEDAVVDHKLRVRGLSGLRIVDASIMPTITSGNTNSPTIMIAEKAAAFI 76


>SB_2678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = -1

Query: 215 RRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKRRL 54
           R++ TK L+ + F+ YR   H  T  G+SP+   +GR+ +  FH  H  L+ R+
Sbjct: 25  RKNFTKKLQRFLFQ-YRVTPHTTT--GRSPAELLNGRKLKPRFHLLHPALRGRV 75


>SB_11739| Best HMM Match : DUF1545 (HMM E-Value=3.6)
          Length = 540

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 257 MPESSTRHNRYRLGRRSSTKSLRNWR-FESYRCIGHAVTADGQSPSSDHDGRRARRGF 87
           MP  +TR   ++ G+RSS ++LR ++ F   R +   V  +G+S  + H        F
Sbjct: 446 MPRKTTRRQWHQAGQRSSNEALRPFKLFRGSRRLHEVVLFNGRSSRNLHTASSENEAF 503


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 30/128 (23%), Positives = 54/128 (42%)
 Frame = -3

Query: 390 KISESKILESEYGIELDPEATDECSETSEDWSDDWMECMIRLHTDARIINSAQPLSAWSS 211
           K  E  + E EYG++ +     EC + SE  + DW    + +  DA  +++ Q ++   S
Sbjct: 368 KAIEQALYEEEYGVKFN---LPECPK-SEGRTQDWKSAFLAMLEDAS-VSATQQINYMRS 422

Query: 210 ILN*KSTELEV*ELSMHRSCRHSRRAIPKQRS*WSPSEARLSSKTLIPKTTAVRVYEKNI 31
             + +   L    +  +R  +H R      +  W+  E R     +I K    R+ E   
Sbjct: 423 FTSGEPQRL----VDSYRKRQH-RDPSTLLKELWAELEQRFGGPAVISKELLQRLRETAK 477

Query: 30  FENGNKDL 7
           F  G +D+
Sbjct: 478 F--GERDV 483


>SB_683| Best HMM Match : zf-C2H2 (HMM E-Value=0.85)
          Length = 272

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
 Frame = -3

Query: 297 SDDWMECMIRLHTDARIINSA-----QPLSAWSSIL----N*KSTELEV*ELSMHRSCRH 145
           +D W+E  +RL  DA+   SA     Q  S W  +L    + K +  E   L M++ CR 
Sbjct: 37  ADTWLE--VRL-PDAKTAQSAMSAVIQLRSTWMRLLQLRLDAKRSGSETGLLEMNK-CRD 92

Query: 144 SRRAIPKQRS*WSPSEARLSSKTLIP 67
             RA+ K+ S +  S  R S++ L+P
Sbjct: 93  LERALAKKLSEFLDSNIRFSTRRLLP 118


>SB_4939| Best HMM Match : 7tm_1 (HMM E-Value=0.049)
          Length = 764

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 107 RRARRGFHQRHSFLKRRLFVFTKKTYLKMEIKT 9
           RRA + FHQ  S L+ R F+   +T+L   I+T
Sbjct: 290 RRAVQEFHQLDSNLQVRQFLLETRTFLHQMIRT 322


>SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 224 RLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKRRL 54
           R   R  T  L+ + F+ YR   H  T  G+SP+   +GR+ +  F   H  L+ R+
Sbjct: 18  RASGRDLTTKLQRFLFQ-YRVTPHTTT--GRSPAELLNGRKLKTRFDLLHPALRGRV 71


>SB_21899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -1

Query: 272 SDCTLMPESSTRHNR---YRLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDH---D 111
           +D  +  ++   H R   YR  R + T+  R     ++   GHA T   ++ +       
Sbjct: 190 TDAVMRIDAKAMHGRRGAYRRKRHARTQGARTNAKGTHGRRGHAQTQRARTDAVVRIYAK 249

Query: 110 GRRARRGFHQRHSFLKRRLFVFTKK 36
           G   RRG H+R S  + R  V T+K
Sbjct: 250 GMHGRRGAHRRKSHARTRGCVQTQK 274


>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
          Length = 351

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 224 RLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKRRL 54
           R   R  T  L+ + F+ YR   H  T  G+SP+   +GR+ +  F   H  L+ R+
Sbjct: 145 RASGRDLTTKLQRFLFQ-YRVTPHTTT--GRSPAELLNGRKLKTRFDLLHPALRGRV 198


>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 224  RLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKRRL 54
            R   R  T  L+ + F+ YR   H  T  G+SP+   +GR+ +  F   H  L+ R+
Sbjct: 894  RASGRDLTTKLQRFLFQ-YRVTPHTTT--GRSPAELLNGRKLKTRFDLLHPALRGRV 947


>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 593

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
 Frame = -3

Query: 441 SHPDDMIVAKDGLRY-----LKKISESKI--LESEYGIE-----LDPEATDECSE 313
           SH ++M ++    RY     L + SESK+  L +  G+E     L+ E TDECS+
Sbjct: 469 SHEENMSISGSNARYMVMQKLSRKSESKVMVLRNMVGVEDLDEDLEHEVTDECSK 523


>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = -3

Query: 261 TDARIINSAQPLSAWSSILN*KSTELEV*ELSMHRSCRHSRRAIPKQRS*WSPSEARLSS 82
           T+   I   + +  W +    + TE++  + S+ R  R SRR+    RS  S +  RLS 
Sbjct: 383 TNKEFIVFEEKILNWIASAEERETEIQPSD-SVSRVSRRSRRSSSSVRSAVSETRLRLSV 441

Query: 81  KTLIPKTTAVRVYE 40
           K    +  A RV E
Sbjct: 442 KRAAMEVEASRVSE 455


>SB_42193| Best HMM Match : DUF1168 (HMM E-Value=0.4)
          Length = 425

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 158 GHAVTADGQSPSSDHDGRRARRGFHQRHSF 69
           G A   DG  P S H GRR+ R    R  +
Sbjct: 59  GKAAKRDGMRPESPHGGRRSTRRMLPRRPY 88


>SB_34212| Best HMM Match : EGF (HMM E-Value=1.1e-05)
          Length = 178

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 308 QKTGQMTGWSA*SDCTLMPESST-RHNR--YRLGRRSSTKSLRN 186
           Q+ G  +G +  ++ T+  E  T RH R  Y L +R++TKSLRN
Sbjct: 40  QRRGIKSGDTV-AEVTMKNEERTQRHKRRLYSLSQRTTTKSLRN 82


>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
          Length = 250

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = -3

Query: 261 TDARIINSAQPLSAWSSILN*KSTELEV*ELSMHRSCRHSRRAIPKQRS*WSPSEARLSS 82
           T+   I   + +  W +    + TE++  + S+ R  R SRR+    RS  S +  RLS 
Sbjct: 89  TNKEFIVFEEKILNWIASAEERETEIQPSD-SVSRVSRRSRRSSSSVRSAVSETRLRLSV 147

Query: 81  KTLIPKTTAVRVYE 40
           K    +  A RV E
Sbjct: 148 KRAAMEVEASRVSE 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,624,005
Number of Sequences: 59808
Number of extensions: 288475
Number of successful extensions: 846
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)