Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0604.Seq
         (476 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    55   1e-07
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    55   1e-07
AL137689-1|CAB70875.1|  420|Homo sapiens hypothetical protein pr...    29   8.3  

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = -2

Query: 217 VVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAERGAAFIK 80
           VVDPQ +V G+  LRV+DAS+MPS  +GN  A  +M+AE+ A  IK
Sbjct: 527 VVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = -2

Query: 217 VVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAERGAAFIK 80
           VVDPQ +V G+  LRV+DAS+MPS  +GN  A  +M+AE+ A  IK
Sbjct: 415 VVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 460


>AL137689-1|CAB70875.1|  420|Homo sapiens hypothetical protein
           protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 248 SSTRHNRYRLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRG 90
           SS R  R    RRSS+++++  R ES++   H +      P     GRR + G
Sbjct: 120 SSQRMRRSGRTRRSSSRTMKR-RLESFKSTKHNICFTKSKPRPRKTGRRKKDG 171


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,580,553
Number of Sequences: 237096
Number of extensions: 1314504
Number of successful extensions: 3020
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3016
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)