Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0604.Seq
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    66   2e-13
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   0.73 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 66.1 bits (154), Expect = 2e-13
 Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 6/65 (9%)
 Frame = -2

Query: 253 QNHQLGTTAIG------LVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAERGA 92
           +NHQ GT  +G       VV P+LKV+GI GLRV DASV P   +GNP A++ MV ER A
Sbjct: 542 ENHQTGTAKMGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMVGERAA 601

Query: 91  AFIKD 77
            FIK+
Sbjct: 602 DFIKE 606



 Score = 35.5 bits (78), Expect = 3e-04
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = -3

Query: 465 PLFYPNFFSHPDDMIVAKDGLRYLKKISESKILESEYGIELDPEATDECSETSEDWSDDW 286
           P+ + N  +   D  V    +R ++K+  + ++  + G+E       +C E  ED SDD+
Sbjct: 473 PVIWSNDLATEHDRSVMIQAIRVVQKLVNTTVMR-DLGVEFQKIELKQCDEFVED-SDDY 530

Query: 285 MECMIRLHTDA 253
             C+I+ +T A
Sbjct: 531 WNCVIQYNTRA 541


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 251 ESSTRHNRYRLGRRSSTKSLRNWR-FESYR 165
           E  T H RY   R    KS +N R +  YR
Sbjct: 264 EERTSHKRYSRSREREQKSYKNEREYRKYR 293


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 285 SSHLTSLLRSHYTHQSLRDLVL 350
           + H T+L   ++ H+SL++++L
Sbjct: 94  AEHFTALGNFYFVHESLKNVLL 115


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 246 INSAQPLSAWSSILN*KSTELEV*ELSMHRSCRHSRRAIPK 124
           + S +P +   S+LN  + ++E   +  HR  R S +A  K
Sbjct: 631 MESFKPPTLTESLLNRHNEDMEKLMMLKHREFRSSIKASDK 671


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,358
Number of Sequences: 438
Number of extensions: 2467
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)