Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0604.Seq
(476 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 49 2e-06
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R... 47 8e-06
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored... 46 2e-05
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 46 2e-05
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 45 2e-05
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored... 44 4e-05
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 44 5e-05
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored... 42 2e-04
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 29 2.2
At2g42120.2 68415.m05210 DNA polymerase delta small subunit-rela... 28 3.8
At2g42120.1 68415.m05209 DNA polymerase delta small subunit-rela... 28 3.8
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ... 27 6.6
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 27 6.6
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 27 6.6
At4g11300.1 68417.m01826 expressed protein 27 8.7
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 27 8.7
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/47 (51%), Positives = 27/47 (57%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD KV GI GLRVID S P NPQA +MM+
Sbjct: 534 HYHGGCQVGKVVDKNYKVLGIDGLRVIDGSTFLKSPGTNPQATVMML 580
>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
(R)-oxynitrilase, putative similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|52707];
contains Pfam protile PF00732 GMC oxidoreductase
Length = 552
Score = 46.8 bits (106), Expect = 8e-06
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD LKV G+ LR++D S P NPQA +MM+
Sbjct: 492 HYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNISPGTNPQATLMML 538
>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 577
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD KV G+ LR+ID S P NPQA IMM+
Sbjct: 509 HYHGGCQVGKVVDNNYKVLGVDALRIIDGSTFLKSPGTNPQATIMML 555
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VV P KV G+ LRVID S P NPQA +MM+
Sbjct: 529 HYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMM 575
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 45.2 bits (102), Expect = 2e-05
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD +V GI LRVID S P NPQA +MM+
Sbjct: 518 HYHGGCQVGRVVDKNYRVLGIDSLRVIDGSTFLKSPGTNPQATVMML 564
>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 501
Score = 44.4 bits (100), Expect = 4e-05
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAE-RGAAFIKDTH 71
H G +G VVD + KV G+ LRV+D S P NP A ++M+ +G +K+
Sbjct: 425 HYHGGCVVGSVVDEEYKVNGVKRLRVVDGSTFEESPGTNPMATVLMLGRYQGIKILKERE 484
Query: 70 S*ND 59
D
Sbjct: 485 EQED 488
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 44.0 bits (99), Expect = 5e-05
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD KV GI LRVID S + P NPQA +MM+
Sbjct: 510 HYHGGCVVGRVVDGDYKVIGIDRLRVIDMSTVGYCPGTNPQATVMML 556
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -3
Query: 468 SPLFYPNFFSHPDDMIVAKDGLRYLKKISESK 373
+P+ N+F HPDD+ G++ ++++ +SK
Sbjct: 425 NPIVTFNYFQHPDDLKRCVRGIQTIERVVQSK 456
>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 503
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAE-RGAAFIKD 77
H G +G VV+ + KV G+ LRV+D S P NP A ++M+ +G +K+
Sbjct: 445 HYHGGCVVGSVVNEEYKVNGVKRLRVVDGSTFEESPGTNPMATVLMLGRYQGIKILKE 502
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 140 DGQSPSSDHDGRRARRGFHQRHS 72
D + SD DG RA RGFH S
Sbjct: 98 DDEEDGSDEDGARAARGFHASSS 120
>At2g42120.2 68415.m05210 DNA polymerase delta small subunit-related
similar to DNA polymerase delta small subunit SP:Q9LRE5
from [Oryza sativa]
Length = 440
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 471 VSPLFYPNFFSHPDDMIVAKD 409
V+PL P+ F HPDD ++ +D
Sbjct: 101 VTPLVKPHNFMHPDDNLILED 121
>At2g42120.1 68415.m05209 DNA polymerase delta small subunit-related
similar to DNA polymerase delta small subunit SP:Q9LRE5
from [Oryza sativa]
Length = 441
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 471 VSPLFYPNFFSHPDDMIVAKD 409
V+PL P+ F HPDD ++ +D
Sbjct: 102 VTPLVKPHNFMHPDDNLILED 122
>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
long chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 748
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 265 AH*CQNHQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVA 104
AH + ++G TA +D + + GL V D S++PS NP I A
Sbjct: 678 AHQMGSCRMGVTAEEGALDENGESWEAEGLFVCDGSILPSAVGVNPMITIQSTA 731
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 402 RYLKKISESKILESEYGIELDPEATDECSETSEDWSDDWMECMIRLHTDARI 247
R + ++ E + E EL+ E ECS T+ + + + I+L TDA +
Sbjct: 586 REVAEVIEKLKTQEEDTAELEDEDEGECSGTTPEEDSEQPKKRIKLDTDATV 637
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 402 RYLKKISESKILESEYGIELDPEATDECSETSEDWSDDWMECMIRLHTDARI 247
R + ++ E + E EL+ E ECS T+ + + + I+L TDA +
Sbjct: 589 REVAEVIEKLKTQEEDTAELEDEDEGECSGTTPEEDSEQPKKRIKLDTDATV 640
>At4g11300.1 68417.m01826 expressed protein
Length = 371
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 167 RCIGHAVTADGQSPSSDHDGRRARR 93
RC AVTA Q+P SD RRA+R
Sbjct: 130 RCAEIAVTALKQTPLSDGSVRRAKR 154
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = -3
Query: 396 LKKISESKILESEYGIELDPEATDECSETS--EDWSDDWM----ECMIRLHTDARIINSA 235
L K +LE +Y T+ C+ EDW ++ M C + +H + ++ +
Sbjct: 468 LDKQKMLSLLEEKYEPVRAKWTTERCAVCRWVEDWEENKMIICNRCQVAVHQECYGVSKS 527
Query: 234 QPLSAW 217
Q L++W
Sbjct: 528 QDLTSW 533
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,145,779
Number of Sequences: 28952
Number of extensions: 198513
Number of successful extensions: 594
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -