Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0603.Seq
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 116 3e-27
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 114 6e-27
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 111 6e-26
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 99 3e-22
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 75 4e-15
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 51 1e-07
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 42 7e-05
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 29 0.38
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 28 0.66
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 28 0.88
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 3.5
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 3.5
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 6.2
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 8.2
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 116 bits (278), Expect = 3e-27
Identities = 68/131 (51%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Frame = +3
Query: 81 AVGIDLGTTYSCVGVXXHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-T 257
++GIDLGTTYSCVG + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 258 TQYSMPNVSXDVSSKMLLCKPT*STGLSRLSVMDAXLRSRXHIXVKTKPFSPRKSXSMVL 437
T + + + +S D + +TK F+P + SMVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVIS-KDGKPVLQVEYKGETKTFTPEEISSMVL 122
Query: 438 TKMNETAEXIL 470
KM ETAE L
Sbjct: 123 MKMRETAEAYL 133
Score = 90.6 bits (215), Expect = 1e-19
Identities = 43/81 (53%), Positives = 52/81 (64%)
Frame = +2
Query: 251 PHNTIFDAKRLXGRKFEDATVQADMKHWPFEVVSDGCKXKIKXXYXGEDKTFFPEEVXFH 430
PHNTIFDAKRL GRKF+D VQ+DMKHWPF+V+S K ++ Y GE KTF PEE+
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 431 GAYENE*NCRXYLGKTVQNAV 493
+ YLG V +AV
Sbjct: 121 VLMKMRETAEAYLGGKVTDAV 141
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 114 bits (275), Expect = 6e-27
Identities = 67/134 (50%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
Frame = +3
Query: 81 AVGIDLGTTYSCVGVXXHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 260
++GIDLGTTYSCVG + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-- 61
Query: 261 QYSMPNVSXDVSSKMLLCKPT*STGLSR--LSVMDAXLRSRXHIXVK--TKPFSPRKSXS 428
++ + + + P + + V++ + + K TK F+P + S
Sbjct: 62 HNTIFDAKRLIGRR--FNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISS 119
Query: 429 MVLTKMNETAEXIL 470
MVL KM E+AE L
Sbjct: 120 MVLLKMRESAEAFL 133
Score = 85.0 bits (201), Expect = 5e-18
Identities = 40/81 (49%), Positives = 51/81 (62%)
Frame = +2
Query: 251 PHNTIFDAKRLXGRKFEDATVQADMKHWPFEVVSDGCKXKIKXXYXGEDKTFFPEEVXFH 430
PHNTIFDAKRL GR+F D VQ+DMKHWPF+V+ K I+ + GE KTF PEE+
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 431 GAYENE*NCRXYLGKTVQNAV 493
+ + +LG V +AV
Sbjct: 121 VLLKMRESAEAFLGGKVTDAV 141
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 111 bits (267), Expect = 6e-26
Identities = 60/132 (45%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
Frame = +3
Query: 84 VGIDLGTTYSCVGVXXHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-TT 260
+GIDLGTTYSCV V +G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP T
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 261 QYSMPNVSXDVSSKMLLCKPT*STGLSRLSVMDAXLRSRXHIXVKTKPFSPRKSXSMVLT 440
+ + + + + K S ++ + L ++ K K F+P + +M+L+
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPL-VEVNVGGKKKKFTPEEISAMILS 156
Query: 441 KMNETAEXILAK 476
KM +TAE L K
Sbjct: 157 KMKQTAEAYLGK 168
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 99.1 bits (236), Expect = 3e-22
Identities = 64/143 (44%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Frame = +3
Query: 81 AVGIDLGTTYSCVGVXXHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 260
A+GIDLGTTYSCV V VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 261 -----------QYSMPNVSXDVSSKMLLCKPT*STGLSRLSVMDAXLRSRXHIXVKTKPF 407
+Y P D+ K K + G+ + V + + K F
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDI--KHWPFKVIDNNGIPTIEV---------NYLGEKKQF 116
Query: 408 SPRKSXSMVLTKMNETAEXILAK 476
+ ++ +MVLTKM E +E L K
Sbjct: 117 TAQEISAMVLTKMKEISEAKLNK 139
Score = 68.5 bits (160), Expect = 5e-13
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +2
Query: 251 PHNTIFDAKRLXGRKFEDATVQADMKHWPFEVVSDGCKXKIKXXYXGEDKTFFPEEV 421
P NT+FDAKRL GR++ED Q D+KHWPF+V+ + I+ Y GE K F +E+
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEI 121
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 75.4 bits (177), Expect = 4e-15
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Frame = +3
Query: 72 KAPAVGIDLGTTYSCVGVXXHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 248
K P +GIDLGTT SC+ + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 249 NPTTQYSMPNVSXDVSSKMLLCKPT*STGLSRLSVMDAXLRSRXH------IXVKTKPFS 410
NP + ++K L+ + + R + + + H + + K +S
Sbjct: 109 NPENTF--------FATKRLIGRRFKEPEVQR-DIKEVPYKIVEHSNGDAWLEARGKTYS 159
Query: 411 PRKSXSMVLTKMNETAEXILAK 476
P + +L+KM ETA L K
Sbjct: 160 PSQIGGFILSKMRETASTYLGK 181
Score = 47.6 bits (108), Expect = 1e-06
Identities = 27/81 (33%), Positives = 39/81 (48%)
Frame = +2
Query: 251 PHNTIFDAKRLXGRKFEDATVQADMKHWPFEVVSDGCKXKIKXXYXGEDKTFFPEEVXFH 430
P NT F KRL GR+F++ VQ D+K P+++V KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHS---NGDAWLEARGKTYSPSQIGGF 166
Query: 431 GAYENE*NCRXYLGKTVQNAV 493
+ YLGK V+NAV
Sbjct: 167 ILSKMRETASTYLGKDVKNAV 187
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 50.8 bits (116), Expect = 1e-07
Identities = 21/61 (34%), Positives = 38/61 (62%)
Frame = +3
Query: 69 AKAPAVGIDLGTTYSCVGVXXHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 248
++ VGID G + + + V + +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 249 N 251
N
Sbjct: 63 N 63
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 41.5 bits (93), Expect = 7e-05
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 84 VGIDLGTTYSCVGVXXHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 251
+GI G S + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 29.1 bits (62), Expect = 0.38
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 84 VGIDLGTTYSCVGVXXHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 260
+ ID GT ++ + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 261 QYSMPNV 281
+S+ NV
Sbjct: 84 -HSIRNV 89
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 28.3 bits (60), Expect = 0.66
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 180 PSYVAFTDTERLIGDAAKNQVAMNPTTQYSMPNVSXDVSSKMLLC 314
P +A T ER++ AAK A+N T Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 0.88
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 76 HPQ*ESIWVPRTLALVSXXTGRWRSSPTTRAT 171
HP S W+P LVS W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -2
Query: 363 LHPSLTTSKGQCFMSACTVASSNLRPMRRLASNIVLWGSSPPGSWRHL 220
L L S+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1169 LFKDLNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +3
Query: 225 AAKNQVAMNPTTQYSMPNVSXDVSSKML------LCKPT*STGLSRLSVMD 359
A K Q+ +NP + +PNV D + +L +C+P + ++ SV+D
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLLDGSLYGICRPL--SSRAQTSVLD 371
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 6.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 391 TXIXXLDLXFASITDNLERPVLHVGLHSSIFELTSXETFGI 269
T I L + S+TDN+ER + +G + I +TS F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 361 ASITDNLERPVLHVGLHSS 305
A + NL RP+ H LHSS
Sbjct: 408 APVIRNLPRPIYHQDLHSS 426
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,477
Number of Sequences: 5004
Number of extensions: 35709
Number of successful extensions: 105
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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