Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0602.Seq
         (473 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       28   0.050
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.62 

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 0.050
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 193 FGSQPMHRRR*RIYYWSSVHCTPRLYRNSCVPSHCSLTDSYPYRSKI-QLLYFQIHDFSC 17
           FG+  ++    R YYW +++ T +    SC     + + + P++  +  +LY  I D  C
Sbjct: 143 FGATKVYNSMKREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPHQGPLTPILYDHIGDLVC 202


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.62
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 70  DKNRSVNSGSERKSSGKDEEYSEQNSSNK-SFNDGDASADYQTKSKKVE 213
           D+ RS  + +E KSS  D   SE+ S    S N   + AD+     KVE
Sbjct: 29  DEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSRADHSPVFGKVE 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.126    0.328 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,910
Number of Sequences: 336
Number of extensions: 1219
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)