Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0602.Seq
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.006
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 31 0.12
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 30 0.21
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 30 0.21
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.48
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 0.63
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.83
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 28 0.83
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 27 1.1
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub... 27 1.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 1.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 1.5
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.5
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 27 1.9
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 1.9
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 26 2.5
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 2.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 3.4
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 26 3.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 3.4
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 26 3.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.4
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 4.5
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 25 4.5
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 4.5
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 4.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.9
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 5.9
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 25 5.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 5.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 5.9
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 7.8
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 7.8
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 7.8
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 7.8
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 7.8
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 7.8
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 25 7.8
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 7.8
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.1 bits (77), Expect = 0.006
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 7 SXSNKKSREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSE-QNSSNKSFNDGDASA 183
S S+ +S E++ S + ++ V +E K G E S+ ++SS+ S GD+ +
Sbjct: 164 SDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDS 223
Query: 184 DYQTKSKKVEXNSARDKKEKEKTEQE 261
++S E +S +KK K + E
Sbjct: 224 SSDSES---ESSSEDEKKRKAEPASE 246
Score = 34.3 bits (75), Expect = 0.010
Identities = 26/91 (28%), Positives = 39/91 (42%)
Frame = +1
Query: 7 SXSNKKSREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASAD 186
S S S E + E+E S SE SS + EE E+ + K ++S+D
Sbjct: 108 SESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEE--EEEAVVKIEEKKESSSD 165
Query: 187 YQTKSKKVEXNSARDKKEKEKTEQEILTERT 279
++S E S E E E+E + E+T
Sbjct: 166 SSSESSSSESESESSSSESE--EEEEVVEKT 194
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 30.7 bits (66), Expect = 0.12
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 264 SDGTYKXSEREKEQSSIVNQSKGSNXRDSSESDKSGRKVNK 386
S G K SE + E++ N++KG N + ++DKS + K
Sbjct: 772 STGITKLSENDNEKAEESNETKGFNTTIAKQNDKSSKSEGK 812
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.9 bits (64), Expect = 0.21
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = +1
Query: 40 NKEAESXTYRDKNRSVNSGSERK-SSGKDEEYSEQNSSNKSFNDG------DASADYQTK 198
+ +AES ++NR +S +++ S +EE SE+ S++ S ++ ++ +
Sbjct: 11 DSDAESVDSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVP 70
Query: 199 SKKVEXNSARDKKEKEKTEQEILTE 273
KK S + + E +E+E TE
Sbjct: 71 KKKAVAASEDSESDSESSEEEEETE 95
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.9 bits (64), Expect = 0.21
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 255 TRNSDGTYKXSEREKEQSSIVNQSKGSNXRD-SSESDKSGRK 377
T+ + T + + KE++S+ N KG N ++ +E +K G+K
Sbjct: 500 TQGPNSTKESKQAVKEETSVKNSPKGKNTKNGKAEKEKPGKK 541
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.7 bits (61), Expect = 0.48
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 91 SGSERKSSGKDEEYSEQNSSNKSFNDGDASA---DYQTKSKKVEXNSA--RDKKEKEKTE 255
S S KS K ++ ++ +++ +DGD + D + K K E + A +D+K ++K E
Sbjct: 143 SESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDRKTRKKEE 202
Query: 256 Q 258
+
Sbjct: 203 K 203
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 0.63
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +1
Query: 97 SERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKEKEKTEQEILTER 276
S+ S ++EE SE+ S + S DG + ++ + + + + K +E + + ER
Sbjct: 953 SDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERKARQEDAKHDAFEER 1012
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 27.9 bits (59), Expect = 0.83
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 100 ERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 195
+++ K +S + SSN S ND DAS D T
Sbjct: 162 QKRFETKKNNFSVKESSNLSNNDSDASLDEDT 193
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.9 bits (59), Expect = 0.83
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 22 KSREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDA--SADYQT 195
+ E E +E E + V +GS+ K D+E S ++ + D + SA
Sbjct: 341 EEEEEEEQEEEQEEDEEDEEEVGAGSDIKGFDADKEASVARATINKYEDDEVIPSAVETD 400
Query: 196 KSKKVEXNSARDKKEKEKTEQEIL 267
+S+ V S D + + ++ I+
Sbjct: 401 RSETVTETSVGDGSVQRRVKRRIV 424
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +1
Query: 118 KDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKEKEKTEQEILTERTXLLSA 294
+D S SS K+F S KKVE N A D+ K+ IL E T LLS+
Sbjct: 595 RDTSMSAYMSSRKTFEINPKSPIIAELKKKVEENGAEDRSVKDLA--TILYE-TALLSS 650
>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 125
Score = 27.5 bits (58), Expect = 1.1
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 70 DKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKK 237
D N +++ S+ KD +S Q +SN + D +ADY K A+D+K
Sbjct: 35 DMNLTLDINSQIYPLEKDATFSLQITSNLNSPDLKEAADYIMYGKVYRVEEAKDEK 90
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.1 bits (57), Expect = 1.5
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +1
Query: 43 KEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNS 222
++ + Y +K +S SG+ SS E S S + D+ D S+KVE +
Sbjct: 346 EKKQKPVYTNKKKSNRSGTSSISSSGILESSPATSISVDEPQKDSKDD----SEKVEKET 401
Query: 223 ARDKKEKEKTEQE 261
++KE+ + E E
Sbjct: 402 EVERKEENEAEAE 414
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 288 EREKEQSSIVNQSKGSNXRDSSESDKSG 371
+RE+EQS I+++S+ SN + + K+G
Sbjct: 67 QREEEQSRILSRSRSSNNKRRTSFGKNG 94
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 136 EQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKEKEKTEQEILTER 276
E NSS FN D S Q + V A++ E +K ++ +R
Sbjct: 31 EINSSRHKFNIADTSVRKQYNEELVFTKDAKENAEAKKVSSKVKKDR 77
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 19 KKSREFENK-EAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 195
++ E E+ ++E T +D++ SVN E+ K++ ++ +S ++ + +
Sbjct: 70 QRKEELESHVDSEIETSKDES-SVNKVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEK 128
Query: 196 KSKKVEXNSARDKKEKEKTEQEILTE 273
SKK + + A +++ + + I E
Sbjct: 129 VSKKPKVSEAHNEEISPENVETIENE 154
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +1
Query: 100 ERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKEKEK 249
+ + G +EE E + DGD + K + E D +E+E+
Sbjct: 191 DEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEEE 240
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 73 KNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSAR 228
K N+GS + K +SE ++S N D SAD +T+ +E ++
Sbjct: 2 KGSHPNAGSLLEPLHKLNPFSENSTSGHRKNASDHSADGETRPIAIEMKDSK 53
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 109 SSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKEKEKTEQE 261
S+ ++EE + N S +S++ D A + + + + KEK K +E
Sbjct: 161 SNEREEEVEDDNRSVESYSSSDYQARSRRRFSEETTQRRAEIKEKRKKRKE 211
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 3.4
Identities = 16/67 (23%), Positives = 25/67 (37%)
Frame = +1
Query: 73 KNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKEKEKT 252
+NR + S +EE E N +D D + D E + E E
Sbjct: 140 RNRKPDDDEFPSSFPSEEELQEPEQENIDSDDEDLAIDGFGAGAIAENEDESSQDESESE 199
Query: 253 EQEILTE 273
E++ +TE
Sbjct: 200 EEDDITE 206
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 VNSGSERKSSGKDEEYSEQNSSNKSFNDGD-ASADYQTKSKKVEXNSARDKKEKEKTE 255
+ + K GK + + S K+ + A + Q K +K + +DKKEK E
Sbjct: 213 IKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKDKKDKKDKKEKAPKE 270
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/77 (19%), Positives = 35/77 (45%)
Frame = +1
Query: 61 TYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKE 240
T D +S + S S+ S +K + +A + + +S + ++ +DKK+
Sbjct: 567 TEGDAKSPPSSSKSGQGSSLSRRASKHESKHKRDSKHEARPESKHESHRESKSAEKDKKD 626
Query: 241 KEKTEQEILTERTXLLS 291
K+ +++ R+ +S
Sbjct: 627 KKDKKEDSKRSRSHSVS 643
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 3.4
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +1
Query: 25 SREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQN--SSNKSFNDGDASADYQTK 198
S E E AE+ DKN +E ++ DE+ Q+ +N N D +D +++
Sbjct: 182 SNENEKSAAETSIKEDKNGDAAKKNEGSANQDDEKLHSQSLVGNNCEVNSEDEFSDLESE 241
Query: 199 SKKVEXNSA 225
E A
Sbjct: 242 VDPDELEKA 250
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 3.4
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +1
Query: 70 DKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKEKEK 249
+KN+ + S + + + E S ++S+++ + A+ TK + + K EKE+
Sbjct: 1441 NKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQL-----KSEKER 1495
Query: 250 TEQEILTERTXL 285
TE+E+ + L
Sbjct: 1496 TEKELADSKNEL 1507
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.4 bits (53), Expect = 4.5
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 19 KKSREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTK 198
KKSR K + RD++ + E G E++S + F + DY+ K
Sbjct: 115 KKSRSKTPKREIARRQRDEDEWESDEYEEVVDGSASHPIEEDSVSTDFQ----NHDYE-K 169
Query: 199 SKKVEXNSARDKKEKEKTEQEI 264
S E D +E+E+ E+ +
Sbjct: 170 SSDPETERLNDLREREEFEERL 191
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 375 FGQICLTQRNPXSCCPYFDS 316
FG IC T N S C Y +S
Sbjct: 101 FGHICFTVDNIESACAYLES 120
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 67 RDKNRSVNSGSERKSSGKDE-EYSEQNSSNKSFN---DGDASADYQTKSKKVE 213
R +RS N GS R +G+ YS S+ + N + DAS + + E
Sbjct: 162 RKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNPSAE 214
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +1
Query: 73 KNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARDKKEKEKT 252
K+R + ++K + +DE++S+ +NK + + + +E + R++ EKE+
Sbjct: 15 KSRKQDEEKKKKDAEEDEKWSKGVKTNKK------EQEAEKRKAALERKAERERLEKEEM 68
Query: 253 E 255
E
Sbjct: 69 E 69
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.0 bits (52), Expect = 5.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 100 ERKSSGKDEEYSEQNSSNKSFNDGDASADYQTK---SKKVEXNSARDKKEKE 246
E K+ E+Y + NSS S N A+ + K K++E R K++KE
Sbjct: 256 ENKAHKHMEQYFDINSSLNSHNGQSLLAERRNKRYTRKEMEQMKRRTKEKKE 307
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 5.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 16 NKKSREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 195
NKKSR +E + R+K S +E+ S KD+ +N+ N +ND ++ ++
Sbjct: 42 NKKSRNQVRREKKKLL-REKTNSGAKLAEKNSDDKDQ--LTENNDNL-YNDKKSNGNFYD 97
Query: 196 KSK 204
+K
Sbjct: 98 TNK 100
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 25.0 bits (52), Expect = 5.9
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 EKSXSNKKSREFENKEAESXTYRDKNRSVNSG------SERKSSGKDEEYSEQNSSNKSF 162
EK KKS F++ E ++ + +D + ++G SERKSS KD
Sbjct: 19 EKKKKPKKSVAFDD-EVDAVS-KDGPEASSAGATDEDDSERKSSAKDLTTPVTEGEVDEL 76
Query: 163 NDGDASADYQTKSKKVEXNSARDKKEKEKTE 255
D +S + KSKK SA ++ E TE
Sbjct: 77 KDMFSSMKKKKKSKK-SSASAEEQTEDITTE 106
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 5.9
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +1
Query: 1 EKSXSNKKSREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDAS 180
E + + K++ + S DK+R+ S K S K++ S +DG++S
Sbjct: 464 ENNNTPSKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESS 523
Query: 181 AD----YQTKSKKVEXNSARDKKEK 243
+ +KSKK + + + K
Sbjct: 524 PETPLTKASKSKKAKASKLANDTSK 548
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.0 bits (52), Expect = 5.9
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Frame = +1
Query: 4 KSXSNKKSREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDAS- 180
+S NKK E + E YRD+ E+ + D + NS ++ +
Sbjct: 1059 ESELNKKEAELVIFQKEITEYRDQLHKAFQNPEKTHNINDVKSGPLNSDENIYSTSSTTL 1118
Query: 181 ---ADYQ----TKSKKVEXNSARDKKEKEKTEQEILTE 273
D Q +K+ S R K+ E EQ I TE
Sbjct: 1119 SILKDVQELKSLHTKEANQLSERIKEISEMLEQSIATE 1156
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 100 ERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKV---EXNSARDKKEKEKTEQ 258
+RKS GKD+ E + K D D A + ++++ E N A ++K +++Q
Sbjct: 1345 QRKSGGKDDTVPEVGQALKPLEDID-EAPIEGRAQEALEDEDNDATNEKMVSRSKQ 1399
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 1 EKSXSNKKSREFENKEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKS 159
E S ++ +FEN+E++ ++ + + K+ K E EQ S K+
Sbjct: 714 EASQNDVSEDDFENEESDDDKIFEQQTKIE--DDVKNENKTEPVEEQKSEEKN 764
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 7.8
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +1
Query: 1 EKSXSNKKSREFENKEAESXTY----RDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFND 168
E S +N ++ + A+ Y +D+++ + + S+ G+ S+Q + N
Sbjct: 452 EFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQSQQPAWN----- 506
Query: 169 GDASADYQTKSKKVEXNSARDKKEKEKTEQEI 264
S+ YQ SK + A + + KT+ I
Sbjct: 507 --VSSRYQNNSKVQTTSRASENADTNKTQHNI 536
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/70 (22%), Positives = 27/70 (38%)
Frame = +1
Query: 52 ESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEXNSARD 231
E + D + S + ++ S N D D +T S+K +D
Sbjct: 406 ERLNFFDTGVAPTRNSIAMAEAYEKALSSVNIDGDEEVDIDVEETVETISEKPSKKEKKD 465
Query: 232 KKEKEKTEQE 261
KKEK+K + +
Sbjct: 466 KKEKKKEKSK 475
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 76 NRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 195
+RS S S++ YSE+NSSN G S D T
Sbjct: 173 DRSTLSSSQKAKRPLKRSYSEKNSSNAE-PSGSRSGDRGT 211
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 7.8
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +1
Query: 40 NKEAESXTYRDKNRSVNSGSERKSSGK-DEEYSEQNSSN----KSFNDGDASADYQTKSK 204
+K++ S + R + RS + S K DE + +SS S + + + ++S+
Sbjct: 98 HKKSTSTSTRKRARSSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESE 157
Query: 205 KVEXNSARDKKEKEKTEQEILTE 273
E S KK K+K E+E + E
Sbjct: 158 SEEQISKATKKVKQKEEEEYVEE 180
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 175 ASADYQTKSKKVEXNSARDKKEKEKTEQEILTERTXLLS 291
+S +QT +KK N + K++KEK ++ I+ + L S
Sbjct: 76 SSHTFQTPTKK--GNKTKKKRKKEKKKETIVEKNKVLKS 112
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 1 EKSXSNKKSREFEN---KEAESXTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSF 162
++ K RE+ + K+ + Y D S S +K S + + Y+E+ + ++S+
Sbjct: 319 DRDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSYKKRSHRSDRYTERENPDRSY 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.126 0.328
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,034
Number of Sequences: 5004
Number of extensions: 20537
Number of successful extensions: 170
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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