Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0602.Seq
         (473 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450 pr...    26   0.58 
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    24   2.3  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    24   2.3  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    24   2.3  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    24   3.1  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.2  

>AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450
           protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 134 VNRTPVINPLTTAMHRLTTKPNLRRLXRILPE 229
           VN T  + P    +HR+TT+P       ILPE
Sbjct: 360 VNETLRLYPPVATLHRITTQPYQLPNGAILPE 391


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 97  SERKSSGKDEEYSEQN-SSNKSFNDGDASADYQTKSKKVEXNSARD-----KKEKEKTEQ 258
           SER    +DE  S  N SSN S N+ ++S++    +     N+         ++KE TE 
Sbjct: 179 SERIRDSRDERDSLPNASSNNSNNNNNSSSNNNNNTISSNNNNNNSLHHGPLRDKELTEH 238

Query: 259 EIL 267
           E L
Sbjct: 239 EQL 241


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 97  SERKSSGKDEEYSEQN-SSNKSFNDGDASADYQTKSKKVEXNSARD-----KKEKEKTEQ 258
           SER    +DE  S  N SSN S N+ ++S++    +     N+         ++KE TE 
Sbjct: 179 SERIRDSRDERDSLPNASSNNSNNNNNSSSNNNNNTISSNNNNNNSLHHGPLRDKELTEH 238

Query: 259 EIL 267
           E L
Sbjct: 239 EQL 241


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 97  SERKSSGKDEEYSEQN-SSNKSFNDGDASADYQTKSKKVEXNSARD-----KKEKEKTEQ 258
           SER    +DE  S  N SSN S N+ ++S++    +     N+         ++KE TE 
Sbjct: 131 SERIRDSRDERDSLPNASSNNSNNNNNSSSNNNNNTISSNNNNNNSLHHGPLRDKELTEH 190

Query: 259 EIL 267
           E L
Sbjct: 191 EQL 193


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +1

Query: 97  SERKSSGKDEEYSEQN-SSNKSFNDGDASADYQTKSKKVEXNSARD-----KKEKEKTEQ 258
           SER    +DE  S  N SSN S N+ ++S +    +     N+         ++KE TE 
Sbjct: 179 SERIRDSRDERDSLPNASSNNSNNNNNSSGNNNNNTISSNNNNNNSLHHGPLRDKELTEH 238

Query: 259 EIL 267
           E L
Sbjct: 239 EQL 241


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 145 SSVHCTPRLYRNSCVPSHCSLTDSYP 68
           SS HCT +  + SC  +   LT   P
Sbjct: 40  SSAHCTQQTRQASCSDNAAQLTYRLP 65


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.314    0.126    0.328 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,922
Number of Sequences: 2352
Number of extensions: 4556
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)