Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0601.Seq
         (491 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   2.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   2.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.0  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 213 NGNINFNKPCITLWLC 166
           NGN+   K C   W C
Sbjct: 161 NGNVPLGKSCNRYWQC 176


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 195 NKPCITLWLCVVLSL*MHLKIVMAVPRLVDSF 100
           N P +TL LC ++S  + + I + + R V  F
Sbjct: 310 NDPKVTLELCGMISTYLIIMIQLDLARTVPKF 341


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 190 TLHYLMALCSFKFVNAF 140
           T+H L  LC + F  AF
Sbjct: 157 TVHLLFLLCIYHFFCAF 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,317
Number of Sequences: 336
Number of extensions: 1582
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)