Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0601.Seq
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.094
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    28   0.66 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   2.7  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   4.7  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   6.2  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   8.2  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    25   8.2  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 31.1 bits (67), Expect = 0.094
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVE 350
           S  S++E+S+SES+  +    SS  E+ESSS +   +  +   +V+
Sbjct: 84  SSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVK 129



 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSN 362
           +S   +  +S SES+  +    SS  E+ESSS + + +  +S+
Sbjct: 76  KSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESS 118


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGDN 329
           S+ S + +S+S+S+  + ++GS    + SSS  + E+  + N     S+D ++
Sbjct: 141 SEDSDSSSSSSDSESESSSEGSD--SSSSSSSSESESSSEDNDSSSSSSDSES 191



 Score = 28.3 bits (60), Expect = 0.66
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGDN 329
           S+ S + +S+S+S+  + ++GS    + SSS  + E+  + N     S+D ++
Sbjct: 195 SEDSDSSSSSSDSESESSSEGSD--SSSSSSSSESESSSEDNDSSSSSSDSES 245


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 451 SKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGDN 329
           S+ +     S   EA     +Q++  +QSN+ +   TDGDN
Sbjct: 363 SRSYPIPYDSLFEEAPIPPRRQKKTDEQSNKKLLNETDGDN 403


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 75  ILTSYKLLKMSQPNEERPSQFLNAFTNL 158
           ++  +KLLK    N   PSQ  ++FTNL
Sbjct: 822 LIAVHKLLKRVSINAVDPSQTTSSFTNL 849


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKS 344
           +   SQN  ST   +KF     S   E+E  + K    +  SN+ ++ S
Sbjct: 25  EEPDSQNNASTQSQQKFLDFQLSWCPESERKTTKYHLLKFHSNKAIDPS 73


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -2

Query: 481 SSQNENSTSESKKFAXTDGSSXYEAESSSH-KQQEARKQSNRV---VEKSTDGDN 329
           SS+N NS +E+   A  + S    AESSS  K   A  + N+     E S D  N
Sbjct: 122 SSRNSNSANEASAMAFHNVSPPSGAESSSESKSFSASGKGNKADTSAEPSLDAFN 176


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 143 CIHKLKTTQSHKVMQGLLKLMFPFVIPRSYHH 238
           C HK+K  Q H++      L+F F      HH
Sbjct: 348 CFHKIKAAQWHQISP--RSLLFQFQEQNHIHH 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,606
Number of Sequences: 5004
Number of extensions: 24581
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)