Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0601.Seq
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774...    29   1.5  
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282...    28   3.5  
12_02_0031 - 12477787-12478413,12480182-12480268,12480371-124805...    27   8.2  
08_01_0143 - 1125211-1126414,1129217-1129368                           27   8.2  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    27   8.2  

>04_04_1098 +
           30876785-30876835,30876846-30877171,30877396-30877418,
           30877687-30879392
          Length = 701

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 484 DSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGD 332
           D S++++  ++ KK +  D  S  E   S HK     K S    E  +DGD
Sbjct: 294 DDSESDHKNAKCKKSSRHDSESDSE---SDHKNARREKSSRHDSESDSDGD 341


>05_01_0361 -
           2824728-2826043,2826288-2826507,2827616-2827702,
           2827726-2827980,2828704-2828733
          Length = 635

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 481 SSQNENSTSESKKFAXTDGSSXYEAESSSH-KQQEARKQSNRVVEKSTD 338
           S  +EN+  ++KK   T+ S   E ES SH     A +  ++ +E + D
Sbjct: 403 SGTSENAVQDNKKEEYTESSPASEQESKSHTASSSATRSPSQQLESNQD 451


>12_02_0031 -
           12477787-12478413,12480182-12480268,12480371-12480562,
           12480638-12480766,12480840-12480926,12483076-12483537,
           12485088-12485222
          Length = 572

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 228 LRGMTNGNINFNKPCITLWLCVVLSL*MHLKIVMAVP 118
           L G+T G  N     +TL++C+VL   + + I   VP
Sbjct: 406 LTGLTRGGSNIAYFVVTLYMCIVLVESIMMVIAAVVP 442


>08_01_0143 - 1125211-1126414,1129217-1129368
          Length = 451

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 104 ESTKRGTAITIFKCIHKLKTTQSHKVMQGLLKLMFPFVIPR-----SYHHGSR 247
           EST+      +  CI+K+   +   ++Q L    + + +P       YHHG+R
Sbjct: 30  ESTETALGAEVHLCINKIMIHRYPAILQNLKMDYYRYFVPSVVAIGPYHHGAR 82


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 167  QSHKVMQGLLKLMFPFVIPRSYHHGSRC 250
            +S  ++Q L KLM PF  P  Y   S C
Sbjct: 1861 KSKVIVQRLSKLMEPFAFPSDYSRTSSC 1888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,673
Number of Sequences: 37544
Number of extensions: 153539
Number of successful extensions: 335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)