Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0601.Seq
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      31   0.68 
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                29   2.8  
SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)                     27   6.4  
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 481 SSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKS 344
           SSQ   S    KK + ++GS  YE +S S  +  +R QS   ++ S
Sbjct: 386 SSQENTSGYRQKKESISEGSEKYEKDSDSCSESISRSQSESSLKAS 431


>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKST 341
           S+SS N NS+S S   + +  +S   + SSS+    +   S+R    S+
Sbjct: 183 SNSSSNSNSSSNSSSSSNSSSNSSRSSSSSSNSNSNSSSSSSRSSSSSS 231



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGDN 329
           S SS N NS S S   + ++ SS   + SSS     +   S+     S++  +
Sbjct: 151 SSSSSNSNSNSNSNSSSSSNSSSNSNSNSSSSSNSSSNSNSSSNSSSSSNSSS 203



 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSN 362
           S+SS N NS S S   + ++ +S   + SSS+    + + S+
Sbjct: 169 SNSSSNSNSNSSSSSNSSSNSNSSSNSSSSSNSSSNSSRSSS 210


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 478 SQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGDN 329
           + N+N   ESKK+     S      S+  + Q  +K  +  +E  TD  +
Sbjct: 629 NDNKNKNKESKKYDEQGDSRPVSDMSNKDRHQNQKKTGDEEIEDETDASD 678


>SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 343 CSSLLLYCSVCALLVVYANLIPLHXCWSHQXLRTF 447
           C    ++  V +++ +  N I L   W+HQ +RT+
Sbjct: 55  CRRACIFVCVLSVVAIVTNSIVLLVVWTHQRMRTY 89


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSN 362
           S+S+ N NS S S   + ++ +S   + SSS+    +   SN
Sbjct: 452 SNSNSNSNSNSNSNSNSNSNSNSNSSSSSSSNSNSNSNSNSN 493



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSN 362
           S+S+ N NS S S   + ++ +S   + SSS     +   SN
Sbjct: 448 SNSNSNSNSNSNSNSNSNSNSNSNSNSNSSSSSSSNSNSNSN 489



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSN 362
           S+S+ N NS S S   + ++ +S   + SSS     +   SN
Sbjct: 450 SNSNSNSNSNSNSNSNSNSNSNSNSNSSSSSSSNSNSNSNSN 491


>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
          Length = 633

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
 Frame = +1

Query: 190 FVKVDVPIRHSSELSSWEPV*----VLRNCFDYY*NXXXXXXXFRSCRIPHCPHQCSSLL 357
           F+   +  R SS L  WE V      L  C  Y            SC +P     C   +
Sbjct: 501 FLLTHLCARTSSGLIEWESVTQALEALVMCNHYVIRNSSLNMLINSC-LPVFSFSCKDHI 559

Query: 358 LYCSVCALLVVYANLIPLHXCWSHQXLRTF 447
            YC  C LL  Y  +     CW    L  F
Sbjct: 560 -YCQACILLDPYRIIDTPARCWRSSVLERF 588


>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHK---QQEARKQSNRVVEKSTDG 335
           SDSS N N++++++K           AE    K   +   ++QSN  ++ + +G
Sbjct: 385 SDSSSNSNNSAQNEKSVLFSADEERRAEHQKRKLDPEMVKKRQSNPDIKSAIEG 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,374,910
Number of Sequences: 59808
Number of extensions: 188254
Number of successful extensions: 421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)