Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0601.Seq
         (491 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112343-1|AAI12344.1|  508|Homo sapiens SFRS12 protein protein.       32   0.94 
BC067770-1|AAH67770.1|  508|Homo sapiens splicing factor, argini...    32   0.94 
AF459094-1|AAL67778.1|  508|Homo sapiens splicing factor, argini...    32   0.94 
D50370-1|BAA08904.1|  506|Homo sapiens nucleosome assembly prote...    31   2.9  
BC034954-1|AAH34954.1|  506|Homo sapiens nucleosome assembly pro...    31   2.9  
AL009173-1|CAA15661.1|  506|Homo sapiens nucleosome assembly pro...    31   2.9  
AK223621-1|BAD97341.1|  506|Homo sapiens nucleosome assembly pro...    31   2.9  

>BC112343-1|AAI12344.1|  508|Homo sapiens SFRS12 protein protein.
          Length = 508

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
           S+  + E STS  K     DG    E  S+S K++E  K+ +  V K  D
Sbjct: 427 SERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVD 476


>BC067770-1|AAH67770.1|  508|Homo sapiens splicing factor,
           arginine/serine-rich 12 protein.
          Length = 508

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
           S+  + E STS  K     DG    E  S+S K++E  K+ +  V K  D
Sbjct: 427 SERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVD 476


>AF459094-1|AAL67778.1|  508|Homo sapiens splicing factor,
           arginine/serine-rich 12 protein.
          Length = 508

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
           S+  + E STS  K     DG    E  S+S K++E  K+ +  V K  D
Sbjct: 427 SERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVD 476


>D50370-1|BAA08904.1|  506|Homo sapiens nucleosome assembly protein
           protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSS 395
           +SDSS + +STS+S   + T GSS     SSS
Sbjct: 32  ESDSSSSSSSTSDSSSSSSTSGSSSGSGSSSS 63


>BC034954-1|AAH34954.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSS 395
           +SDSS + +STS+S   + T GSS     SSS
Sbjct: 32  ESDSSSSSSSTSDSSSSSSTSGSSSGSGSSSS 63


>AL009173-1|CAA15661.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSS 395
           +SDSS + +STS+S   + T GSS     SSS
Sbjct: 32  ESDSSSSSSSTSDSSSSSSTSGSSSGSGSSSS 63


>AK223621-1|BAD97341.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 variant protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSS 395
           +SDSS + +STS+S   + T GSS     SSS
Sbjct: 32  ESDSSSSSSSTSDSSSSSSTSGSSSGSGSSSS 63


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,090,496
Number of Sequences: 237096
Number of extensions: 845310
Number of successful extensions: 9079
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9078
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)