Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0601.Seq
(491 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY928072-1|AAX78396.1| 1319|Drosophila melanogaster hyperpolariz... 33 0.16
AY928071-1|AAX78395.1| 627|Drosophila melanogaster hyperpolariz... 33 0.16
AY928070-1|AAX78394.1| 618|Drosophila melanogaster hyperpolariz... 33 0.16
AY928069-1|AAX78393.1| 1282|Drosophila melanogaster hyperpolariz... 33 0.16
AY060342-1|AAL25381.1| 245|Drosophila melanogaster GH23838p pro... 33 0.16
AF124300-1|AAD42059.1| 945|Drosophila melanogaster putative vol... 33 0.16
AE013599-1869|ABC66060.1| 627|Drosophila melanogaster CG8585-PD... 33 0.16
AE013599-1868|ABC66059.1| 618|Drosophila melanogaster CG8585-PC... 33 0.16
AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB... 33 0.16
AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE... 33 0.16
AY119485-1|AAM50139.1| 846|Drosophila melanogaster GH07623p pro... 31 0.64
AE014297-4203|AAF56763.2| 1109|Drosophila melanogaster CG5514-PA... 31 0.64
AE014297-4202|AAN14134.1| 1150|Drosophila melanogaster CG5514-PB... 31 0.64
AY089504-1|AAL90242.1| 1012|Drosophila melanogaster GH13383p pro... 31 0.85
AE014134-2932|AAF53667.3| 1330|Drosophila melanogaster CG12750-P... 31 0.85
AY094826-1|AAM11179.1| 1266|Drosophila melanogaster LD39940p pro... 30 2.0
AE013599-2106|AAF58108.2| 1263|Drosophila melanogaster CG30089-P... 30 2.0
AE014297-2332|AAF55402.1| 2112|Drosophila melanogaster CG4090-PA... 29 4.5
>AY928072-1|AAX78396.1| 1319|Drosophila melanogaster
hyperpolarization-activated ionchannel variant
DMIH-A1B2C2 protein.
Length = 1319
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 739 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 779
>AY928071-1|AAX78395.1| 627|Drosophila melanogaster
hyperpolarization-activated ionchannel variant
DMIH-A3B1C1 protein.
Length = 627
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 84 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 124
>AY928070-1|AAX78394.1| 618|Drosophila melanogaster
hyperpolarization-activated ionchannel variant
DMIH-A2B1C1 protein.
Length = 618
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 75 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115
>AY928069-1|AAX78393.1| 1282|Drosophila melanogaster
hyperpolarization-activated ionchannel variant
DMIH-A1B1C1 protein.
Length = 1282
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 739 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 779
>AY060342-1|AAL25381.1| 245|Drosophila melanogaster GH23838p
protein.
Length = 245
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 75 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115
>AF124300-1|AAD42059.1| 945|Drosophila melanogaster putative
voltage- and cyclic nucleotide-gated ion channel
protein.
Length = 945
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 397 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 437
>AE013599-1869|ABC66060.1| 627|Drosophila melanogaster CG8585-PD,
isoform D protein.
Length = 627
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 84 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 124
>AE013599-1868|ABC66059.1| 618|Drosophila melanogaster CG8585-PC,
isoform C protein.
Length = 618
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 75 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115
>AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB,
isoform B protein.
Length = 1290
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 747 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 787
>AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE,
isoform E protein.
Length = 1327
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
H CSS Y +C LL++ ANLI P+ + + L T WI
Sbjct: 747 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 787
>AY119485-1|AAM50139.1| 846|Drosophila melanogaster GH07623p
protein.
Length = 846
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNR 359
S SS N S S K + T SS +E SSSHK+ ++ S+R
Sbjct: 399 SSSSSRSNRESSSSKRSGTTSSSRHE--SSSHKKHKSSSSSSR 439
>AE014297-4203|AAF56763.2| 1109|Drosophila melanogaster CG5514-PA,
isoform A protein.
Length = 1109
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNR 359
S SS N S S K + T SS +E SSSHK+ ++ S+R
Sbjct: 662 SSSSSRSNRESSSSKRSGTTSSSRHE--SSSHKKHKSSSSSSR 702
>AE014297-4202|AAN14134.1| 1150|Drosophila melanogaster CG5514-PB,
isoform B protein.
Length = 1150
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNR 359
S SS N S S K + T SS +E SSSHK+ ++ S+R
Sbjct: 662 SSSSSRSNRESSSSKRSGTTSSSRHE--SSSHKKHKSSSSSSR 702
>AY089504-1|AAL90242.1| 1012|Drosophila melanogaster GH13383p
protein.
Length = 1012
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
+SDSS N +S+ S S +ESS +++EA+++ + K TD
Sbjct: 7 ESDSSSNSSSSDTSSGSDSDARSESSSSESSGREEEEAKQEESAKDAKKTD 57
>AE014134-2932|AAF53667.3| 1330|Drosophila melanogaster CG12750-PA
protein.
Length = 1330
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
+SDSS N +S+ S S +ESS +++EA+++ + K TD
Sbjct: 7 ESDSSSNSSSSDTSSGSDSDARSESSSSESSGREEEEAKQEESAKDAKKTD 57
>AY094826-1|AAM11179.1| 1266|Drosophila melanogaster LD39940p
protein.
Length = 1266
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKST 341
S+SS N NS+S S F GSS ++ + EAR SN V +T
Sbjct: 519 SNSSSNNNSSSSSSVFLNVSGSSSTDS-GDNQVVDEARSISNIAVLPAT 566
>AE013599-2106|AAF58108.2| 1263|Drosophila melanogaster CG30089-PA
protein.
Length = 1263
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKST 341
S+SS N NS+S S F GSS ++ + EAR SN V +T
Sbjct: 519 SNSSSNNNSSSSSSVFLNVSGSSSTDS-GDNQVVDEARSISNIAVLPAT 566
>AE014297-2332|AAF55402.1| 2112|Drosophila melanogaster CG4090-PA
protein.
Length = 2112
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGDN 329
S+SSQ+ +STS S ++ SS E+ +SS Q + SN S +N
Sbjct: 250 SNSSQSSSSTSSS----TSNSSSSQESSTSSSSNQSSSTSSNHQESSSESSNN 298
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,543
Number of Sequences: 53049
Number of extensions: 280885
Number of successful extensions: 1073
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1721789184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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