Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0601.Seq
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    29   2.4  
U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z14092-4|CAD45599.1|  820|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 164 TQSHKVMQGLLKLMFPFVIPRSY 232
           ++ HK+ + L   +FPF IPRSY
Sbjct: 514 SRCHKITKDLSNSLFPFCIPRSY 536


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
            protein C52B9.8 protein.
          Length = 1336

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 490  QSDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
            +S+S  ++NS  + KK    D     E E    K+QE    S + +++  +
Sbjct: 1038 RSESDSDDNSLKKEKKHRKEDHPKEKEKEKKKEKEQEKSTDSEKDLKRKIE 1088


>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -2

Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGD 332
           +S S+  + S+S             Y  E +S  +  ARK S R ++ S DGD
Sbjct: 171 RSSSAAAQRSSSNIFTVPAPAAHVSYRQEFASDNESLARKDSYRAMQSSWDGD 223


>Z14092-4|CAD45599.1|  820|Caenorhabditis elegans Hypothetical
           protein R107.4b protein.
          Length = 820

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 478 SQNENSTSESKKFAXTDGSSXY-EAESSSHKQQEARKQSNRVVEKSTD 338
           +++E + + S++   T   S + +AESS +K+Q  + + + ++E S D
Sbjct: 731 AESEQTLTRSEEIQETQVVSFFCQAESSPNKEQFPKPEQDSILESSID 778


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,665,882
Number of Sequences: 27780
Number of extensions: 143368
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)