Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0601.Seq
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    33   0.001
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    33   0.001
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    33   0.001
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
           H CSS   Y  +C LL++ ANLI  P+   + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
           H CSS   Y  +C LL++ ANLI  P+   + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 337 HQCSSLLLYCSVCALLVVYANLI--PLHXCWSHQXLRTFWI 453
           H CSS   Y  +C LL++ ANLI  P+   + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/54 (18%), Positives = 23/54 (42%)
 Frame = -2

Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGDN 329
           Q+D+ QN+N  + +++       +       +  +Q   KQ++     +   DN
Sbjct: 460 QNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDN 513


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 232 SSWEPV*VLRNCFD 273
           ++WEP+  L NC D
Sbjct: 273 NTWEPISNLINCSD 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,200
Number of Sequences: 438
Number of extensions: 1887
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)