Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0601.Seq
(491 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 33 0.079
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 28 3.0
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 28 3.0
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 28 3.0
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 28 3.9
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 28 3.9
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR... 28 3.9
At4g15980.1 68417.m02426 pectinesterase family protein contains ... 27 5.2
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 27 6.9
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei... 27 9.1
At4g14920.1 68417.m02292 PHD finger transcription factor, putative 27 9.1
At3g06920.1 68416.m00821 pentatricopeptide (PPR) repeat-containi... 27 9.1
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 33.5 bits (73), Expect = 0.079
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -2
Query: 481 SSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNR 359
SS +E +SES + +D SS SSSH++Q+ RK+S++
Sbjct: 212 SSDSETDSSESDSESDSDLSSPSFLSSSSHERQKKRKRSSK 252
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNR 359
S S + +S S+S + SS YE+ SSS + RK + R
Sbjct: 229 SSDSYSSSSDSDSDSESEAYSSSSYESSSSSDGKHRKRKSTTR 271
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNR 359
S S + +S S+S + SS YE+ SSS + RK + R
Sbjct: 229 SSDSYSSSSDSDSDSESEAYSSSSYESSSSSDGKHRKRKSTTR 271
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 490 QSDSS-QNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKST 341
+SD + + ENS + ++ + G E E+++ K RKQ+ E +T
Sbjct: 368 KSDGNVKKENSKVKPRELRSSTGKKKVEVENNNSKSSSKRKQTKETAEVAT 418
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 472 NENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNR 359
+E T ESK+ + D S+ + SS + E ++++NR
Sbjct: 444 DEQKTDESKRESGNDTSNKETEDDSSKTESEKKEENNR 481
>At4g32820.1 68417.m04668 expressed protein ; expression supported by
MPSS
Length = 1817
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 475 QNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
+NEN+ +ESKK + E E S + ++ + + V E+ D
Sbjct: 867 KNENNKTESKKDGSEEQVGYREKEQSEQQSKQIPEHTEEVAEEEKD 912
>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1131
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 484 DSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
+S + S SES+K ++ EA++ + +RK++ + STD
Sbjct: 1044 ESGETSESESESEKEDESEPRETSEADADGDYESVSRKRAKKTTSASTD 1092
>At4g15980.1 68417.m02426 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 701
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 490 QSDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTD 338
Q S +EN +S+S D S + ESS +++ N+ ++ S+D
Sbjct: 259 QPVDSSSENQSSDSSNNRPLDSSKNQQMESSEDTPKKSAFSGNQPLDDSSD 309
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 487 SDSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRV 356
SDS + E+ +SKK +S E E S E +K S +V
Sbjct: 40 SDSDEEESEKKKSKKKDKKRKASEEEDEVKSDSSSEKKKSSKKV 83
>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 758
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -2
Query: 481 SSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVE 350
S N+N E K A G E HK +E + RV E
Sbjct: 511 SGGNQNVYQEDKSDANHSGKETDRLEKEDHKSEEPARWFKRVTE 554
>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
Length = 1055
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 484 DSSQNENSTSESKKFAXTDGSSXYEAESSSHKQQEARKQSNRVVEKSTDGDN 329
DSSQ S SES T+ S+ + + +S +V +S GDN
Sbjct: 481 DSSQGTTSKSESPLHHQTEKSTGSSSHRVDGGKSSKHGRSTLLVRRSVRGDN 532
>At3g06920.1 68416.m00821 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 871
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 310 RSCRIPHCPHQCSSLLLYCSVC 375
R +PHCP +SLLL + C
Sbjct: 90 RRTELPHCPESYNSLLLVMARC 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,981
Number of Sequences: 28952
Number of extensions: 128328
Number of successful extensions: 307
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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