Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0600.Seq
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   0.79 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   2.4  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    26   2.4  
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    26   3.2  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    24   9.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   9.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -2

Query: 449 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 312
           AP  PAAP+ P+A P   Q     ++P A+ V +  PP+  V P V
Sbjct: 544 APQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--PPVAPVAPEV 586


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 212 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 111
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 324 VSRSHHSGVNRLLHKPGQGKICLSSKTYSIFL 229
           V + H  G+N L   PG   I L+SK   I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 445 RQCQQHXFHLKHVRGKHNHFRQFFYLGRFKYI 350
           ++ Q   FH+ + +GKH   R ++  GR K I
Sbjct: 53  KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 437 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 327
           PAAP+P  A P +  P  A   P+  +     P L L
Sbjct: 325 PAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 446 PTVPAAPIPPQA-RPGQAQPLQAV 378
           P  PAAP PP A  P  A P+ ++
Sbjct: 468 PLPPAAPAPPPAPAPAPAAPVASI 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,724
Number of Sequences: 5004
Number of extensions: 37260
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)