Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0600.Seq
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.35
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 1.1
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 28 4.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 5.6
SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 27 9.9
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.35
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 437 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 309
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 336
+P +P AP+ P P P +A+ P LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 305 QA*TDFYTSLVKEKYAFLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 162
Q+ +Y VKEK H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -2
Query: 443 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 336
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 437 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKEKYA 258
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 257 FLRKHIRYSLP 225
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 446 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 318
P+ A+ IPP RP ++P++ P + H +LP RL +P
Sbjct: 38 PSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSERLDYP 79
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 452 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 336
R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 629 RPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -2
Query: 428 PIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 327
P P RPGQAQ L L +HR+L PL L
Sbjct: 40 PGPMARRPGQAQTLGT--LVEDAHMHRSLRPLAL 71
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 169 QGILQVVFSCIKHRYSYGDGKEYRICFRR 255
Q I + F+CIKH + D + +C R+
Sbjct: 236 QAIRRYSFTCIKHSFQLSDDRFSELCTRQ 264
>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 443 TVPAAPIPPQARPGQAQPLQAV 378
++P A IPPQ+ PG P Q++
Sbjct: 1050 SIPGASIPPQSIPGAFLPPQSI 1071
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTLPPLRLVFP 318
+P+VP P PP +PG A + + + V+ + P RL P
Sbjct: 2317 SPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPIAPTRLALP 2363
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,731
Number of Sequences: 59808
Number of extensions: 267090
Number of successful extensions: 641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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