Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0600.Seq
(459 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL611964-2|CAH73872.1| 495|Homo sapiens REST corepressor 3 prot... 30 3.3
AL590101-2|CAH72433.1| 495|Homo sapiens REST corepressor 3 prot... 30 3.3
AK001738-1|BAA91872.1| 495|Homo sapiens protein ( Homo sapiens ... 30 3.3
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat... 30 3.3
AB037764-1|BAA92581.1| 520|Homo sapiens KIAA1343 protein protein. 30 3.3
X76091-1|CAA53705.1| 723|Homo sapiens DNA binding protein RFX2 ... 30 4.4
D21163-1|BAA04699.2| 977|Homo sapiens KIAA0031 protein. 30 4.4
BC071571-1|AAH71571.1| 723|Homo sapiens RFX2 protein protein. 30 4.4
BC028579-1|AAH28579.1| 723|Homo sapiens regulatory factor X, 2 ... 30 4.4
AJ505017-1|CAD43720.1| 850|Homo sapiens small nuclear ribonucle... 30 4.4
AL132655-8|CAM28316.1| 625|Homo sapiens GNAS complex locus prot... 29 5.8
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ... 29 5.8
AK126463-1|BAC86558.1| 559|Homo sapiens protein ( Homo sapiens ... 29 5.8
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein. 29 5.8
CR456774-1|CAG33055.1| 972|Homo sapiens U5-116KD protein. 29 7.7
BC002360-1|AAH02360.1| 972|Homo sapiens elongation factor Tu GT... 29 7.7
>AL611964-2|CAH73872.1| 495|Homo sapiens REST corepressor 3
protein.
Length = 495
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 330
AP+ P P A Q PL LP A +HR PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436
>AL590101-2|CAH72433.1| 495|Homo sapiens REST corepressor 3
protein.
Length = 495
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 330
AP+ P P A Q PL LP A +HR PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436
>AK001738-1|BAA91872.1| 495|Homo sapiens protein ( Homo sapiens
cDNA FLJ10876 fis, clone NT2RP4001838, weakly similar to
Homo sapiens CoREST protein mRNA. ).
Length = 495
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 330
AP+ P P A Q PL LP A +HR PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436
>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
SRCAP protein.
Length = 2971
Score = 30.3 bits (65), Expect = 3.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVL 375
AP VPAAP PP +P A P + L
Sbjct: 1222 APVVPAAPGPPSLQPSGASPSASAL 1246
>AB037764-1|BAA92581.1| 520|Homo sapiens KIAA1343 protein protein.
Length = 520
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 330
AP+ P P A Q PL LP A +HR PPL+
Sbjct: 422 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 461
>X76091-1|CAA53705.1| 723|Homo sapiens DNA binding protein RFX2
protein.
Length = 723
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 309
AP VPA+P + + P +Q + LPR QV + + P++ V+P +
Sbjct: 22 APPVPASPQRVLVQAASSNPKGSQMQPISLPRVQQVPQQVQPVQHVYPAQV 72
>D21163-1|BAA04699.2| 977|Homo sapiens KIAA0031 protein.
Length = 977
Score = 29.9 bits (64), Expect = 4.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 315 SHHSGVNRLLHKPGQGKICLSSKTYSIFLTISVRISVFNTTKHDLEY 175
S +S L+ P G +C SS YSI T+ ++ T D+ Y
Sbjct: 295 SMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINY 341
>BC071571-1|AAH71571.1| 723|Homo sapiens RFX2 protein protein.
Length = 723
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 309
AP VPA+P + + P +Q + LPR QV + + P++ V+P +
Sbjct: 22 APPVPASPQRVLVQAASSNPKGAQMQPISLPRVQQVPQQVQPVQHVYPAQV 72
>BC028579-1|AAH28579.1| 723|Homo sapiens regulatory factor X, 2
(influences HLA class II expression) protein.
Length = 723
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 309
AP VPA+P + + P +Q + LPR QV + + P++ V+P +
Sbjct: 22 APPVPASPQRVLVQAASSNPKGAQMQPISLPRVQQVPQQVQPVQHVYPAQV 72
>AJ505017-1|CAD43720.1| 850|Homo sapiens small nuclear
ribonucleoprotein component protein.
Length = 850
Score = 29.9 bits (64), Expect = 4.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 315 SHHSGVNRLLHKPGQGKICLSSKTYSIFLTISVRISVFNTTKHDLEY 175
S +S L+ P G +C SS YSI T+ ++ T D+ Y
Sbjct: 168 SMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINY 214
>AL132655-8|CAM28316.1| 625|Homo sapiens GNAS complex locus
protein.
Length = 625
Score = 29.5 bits (63), Expect = 5.8
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = -2
Query: 440 VPAAPIPPQARPGQAQPLQAV---LLPRAVQVH----RTLPPLRLVFPG 315
+P PIP RP QP+ L P+ +Q+ R PPLRL+ PG
Sbjct: 372 LPPQPIPTPGRPLTPQPIPTPGRPLTPQPIQMPGRPLRLPPPLRLLRPG 420
>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
FLJ46149 fis, clone TESTI4000621, moderately similar to
Homo sapiens Snf2-related CBP activator protein (SRCAP).
).
Length = 2427
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVL 375
AP VPAAP PP P A P + L
Sbjct: 1481 APVVPAAPGPPSLAPSGASPSASAL 1505
>AK126463-1|BAC86558.1| 559|Homo sapiens protein ( Homo sapiens
cDNA FLJ44499 fis, clone UTERU3000665, highly similar
to Homo sapiens Snf2-related CBP activator protein
(SRCAP). ).
Length = 559
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVL 375
AP VPAAP PP P A P + L
Sbjct: 130 APVVPAAPGPPSLAPSGASPSASAL 154
>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
Length = 3053
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVL 375
AP VPAAP PP P A P + L
Sbjct: 1304 APVVPAAPGPPSLAPSGASPSASAL 1328
>CR456774-1|CAG33055.1| 972|Homo sapiens U5-116KD protein.
Length = 972
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 315 SHHSGVNRLLHKPGQGKICLSSKTYSIFLTISVRISVFNTTKHDLEY 175
S +S L+ P G +C SS YSI T+ ++ T D+ Y
Sbjct: 290 SMYSTDENLILSPLLGNVCFSSSQYSICFTLVSFAKIYADTFGDINY 336
>BC002360-1|AAH02360.1| 972|Homo sapiens elongation factor Tu GTP
binding domain containing 2 protein.
Length = 972
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 315 SHHSGVNRLLHKPGQGKICLSSKTYSIFLTISVRISVFNTTKHDLEY 175
S +S L+ P G +C SS YSI T+ ++ T D+ Y
Sbjct: 290 SMYSTDENLILSPLLGNVCFSSSQYSICFTLVSFAKIYADTFGDINY 336
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,327,225
Number of Sequences: 237096
Number of extensions: 1238897
Number of successful extensions: 3818
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3802
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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