Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0600.Seq
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 29 2.1
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 2.8
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 28 3.8
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 3.8
AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 27 6.6
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 27 6.6
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 27 8.7
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 27 8.7
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 27 8.7
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 27 8.7
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 8.7
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 8.7
AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine re... 27 8.7
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = +3
Query: 336 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNXCC----WHCRCS 452
W+KRP Y R R ++ K LP + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 458 IRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 339
+++AP V AP PP+ + QAQP+Q P V + P
Sbjct: 252 VQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 458 IRRAPTVPAAPIPPQARPGQAQPLQ 384
+++APT AAP PP+ P QA P+Q
Sbjct: 315 VQQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 449 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 336
AP A PI Q +P Q Q QA + + V + PP
Sbjct: 42 APPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAPP 79
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 17 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 109
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
protein C49C3.4 protein.
Length = 1566
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1
Query: 261 CLSSKTYSIFLTISVRISV 205
C S+KTYS+FL ISV +++
Sbjct: 455 CDSTKTYSLFLNISVDLTI 473
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 446 PTVP-AAPIPPQARPGQAQP 390
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical
protein Y11D7A.12b protein.
Length = 504
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 173 EYSKSCLVVLNTDILTEMVRNIEYVFEERHIFP 271
EY +C ++TDI+TE + + ++ E H P
Sbjct: 165 EYKNTCKARMHTDIVTEKI--LTFIHEHNHSAP 195
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 173 EYSKSCLVVLNTDILTEMVRNIEYVFEERHIFP 271
EY +C ++TDI+TE + + ++ E H P
Sbjct: 165 EYKNTCKARMHTDIVTEKI--LTFIHEHNHSAP 195
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 455 RRAPTVPAAPIPPQARPGQAQP 390
+RAP++ A P+PP+ + QP
Sbjct: 549 QRAPSIQAPPLPPRLSASEHQP 570
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 455 RRAPTVPAAPIPPQARPGQAQP 390
+RAP++ A P+PP+ + QP
Sbjct: 549 QRAPSIQAPPLPPRLSASEHQP 570
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 455 RRAPTVPAAPIPPQARPGQAQP 390
+RAP++ A P+PP+ + QP
Sbjct: 532 QRAPSIQAPPLPPRLSASEHQP 553
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 455 RRAPTVPAAPIPPQARPGQAQP 390
+RAP++ A P+PP+ + QP
Sbjct: 490 QRAPSIQAPPLPPRLSASEHQP 511
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 440 VPAAPIPPQARPGQAQPLQAVLLP 369
VP +PPQ RP Q P+Q P
Sbjct: 357 VPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 440 VPAAPIPPQARPGQAQPLQAVLLP 369
VP +PPQ RP Q P+Q P
Sbjct: 454 VPIQTLPPQTRPPQLPPVQITQPP 477
>AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine
receptor, class x protein9 protein.
Length = 309
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 270 GKICLSSKTYSIFLTISVRISVFNTTKHDLEYSL*CLRF*ILLND 136
G + SS +SIF ++S+ ISVF + S+ + F +++D
Sbjct: 8 GVVLFSSSIFSIFSSVSIFISVFKLAFISRKSSIYVIAFFNIISD 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,107
Number of Sequences: 27780
Number of extensions: 208122
Number of successful extensions: 537
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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