Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0600.Seq
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13050.1 68414.m01513 expressed protein                             28   2.6  
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l...    27   8.1  
At1g30130.2 68414.m03683 expressed protein similar to hypothetic...    27   8.1  
At1g30130.1 68414.m03682 expressed protein similar to hypothetic...    27   8.1  
At1g13900.1 68414.m01631 calcineurin-like phosphoesterase family...    27   8.1  

>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 455 RRAPTVPAAPIPPQARPGQAQPLQ 384
           R  P  P  P+PP+  P  A+PLQ
Sbjct: 71  RPLPLRPEEPLPPRHNPNSARPLQ 94


>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
           similarity to Exostosin-like 2, Homo sapiens
           [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
          Length = 765

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 397 HNHFRQFFYLGRFKYIGRFLHFV*CF 320
           HNH  ++ Y+  +    RFL F  CF
Sbjct: 23  HNHHHRYKYISNYGVGRRFLFFASCF 48


>At1g30130.2 68414.m03683 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 383 AVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKEKYAFLRKHIRYSL 228
           ++LLP    +HR LP    V P V     T ++  L   +++F R  +RY+L
Sbjct: 21  SLLLPFRFLLHRLLPSRAAVDPNVSFYEGTVWHDRLRPVRHSF-RYSVRYAL 71


>At1g30130.1 68414.m03682 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 383 AVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKEKYAFLRKHIRYSL 228
           ++LLP    +HR LP    V P V     T ++  L   +++F R  +RY+L
Sbjct: 21  SLLLPFRFLLHRLLPSRAAVDPNVSFYEGTVWHDRLRPVRHSF-RYSVRYAL 71


>At1g13900.1 68414.m01631 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 656

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 57  SRYKTGAFYVC*LKLNKEKVIVKIVRSH 140
           S Y+TG F    L  NKEK+ V  V +H
Sbjct: 540 SMYRTGEFGYTRLVANKEKLTVSFVGNH 567


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,094
Number of Sequences: 28952
Number of extensions: 186040
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)