Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0599.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    25   0.21 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.36 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   4.5  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    20   7.8  

>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 274 LPLGTVLGLGTFAAIQKGHLKPNP 345
           LP+GT +G+G F   +     PNP
Sbjct: 82  LPVGTTVGIGQFLVHRNPKYFPNP 105


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 263 KKLLDCIQLTLSAHLEKT---YTAKQERMGLVHR 171
           KK L C+  TLS +LE+T    ++ + R+ L HR
Sbjct: 222 KKPLLCVVSTLSCYLERTELLRSSGETRLFLTHR 255


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 66  DYLSTFVLERNIIDT 22
           D+L+TF+ E+NI  T
Sbjct: 423 DFLATFLSEQNIQST 437


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 181 WFTGSRRCWTLLIPVGIRIIHS 116
           W   S    TLL+ +G RII S
Sbjct: 461 WVPASDNLPTLLLELGYRIIVS 482


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,120
Number of Sequences: 336
Number of extensions: 1514
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)