Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0599.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   2.5  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   3.3  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    25   5.7  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    24   10.0 

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 269 LWKKLLDCIQLTLSAHLE---KTYTAKQERMGLVHRVQEVLDSVDTRRHSNYS 120
           LW+ +   +   ++  L      Y +++ R+ + H VQE++D V +   +N+S
Sbjct: 363 LWEDIKTAVDTKITGVLRLRNAIYYSERIRLEIDHHVQEIIDDVVSNLVTNHS 415


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 397 KKSXPXTANVXFGNGQILGLVSDVPFE*LQMCPNLTQCPGEDIF-GRNSLIAFS*H 233
           KKS   T  V     +I   + + P++ LQ   N +  PGE +F  ++SL  +  H
Sbjct: 143 KKSPNTTITVSISLAEI---IEETPYDLLQPNVNSSHTPGETVFVQKDSLTGYHLH 195


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 190 EWVWFTGSRRCWTLLIPVGI 131
           EW+ FT  ++C TLL+ + +
Sbjct: 6   EWIKFTRLKKCATLLVQLSL 25


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 296 PNTVP-RGRHLWKKLLDCIQLTLSAHLEKTYTAKQERMGLVHRVQEVLDSVDT 141
           P+  P  G+H  ++ L   Q T + HL K  T  ++     H  QE L S  T
Sbjct: 681 PSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQHTRQESLPSQQT 733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,638
Number of Sequences: 5004
Number of extensions: 24871
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)