Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0599.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0462 + 5976706-5976816,5976845-5976988                           29   1.8  
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831     27   4.1  
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270...    26   9.5  

>04_01_0462 + 5976706-5976816,5976845-5976988
          Length = 84

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 254 LDCIQLTLSAHLEKTYTAKQERMGLVHRVQEVLDSVD 144
           LD + +  SAHLE T TAK E +  ++   ++L+ +D
Sbjct: 41  LDLLAMITSAHLEPTLTAK-EFLRAINEQSKMLEEID 76


>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
          Length = 711

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 381 LLPMSPLXMAKSWVWFQMSLLNSC-KCAQT 295
           L P S L  AK W +   + +N+C KC+ T
Sbjct: 81  LFPFSLLKRAKQWFYANRAAINTCDKCSTT 110


>06_01_0375 +
           2699179-2699264,2699697-2699786,2699913-2699991,
           2700816-2700893,2701290-2701338,2702183-2702232,
           2702704-2702853,2703437-2703517,2703593-2703609,
           2705804-2705893,2706033-2706111,2706234-2706311,
           2707554-2707687,2707858-2707936,2708108-2708188,
           2708263-2708400
          Length = 452

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 293 NTVPRGRHLWKKLLDCIQLTLSAHLEKTYTAKQERMG 183
           N +P+G H W KL+   +L L   LE+   + QE  G
Sbjct: 193 NWLPKGTHQWSKLVTPEELVLI--LERASISVQEMAG 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,793,388
Number of Sequences: 37544
Number of extensions: 149900
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)