Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0599.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   3.2  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  27   4.3  
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_51996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   26   9.8  

>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -2

Query: 272 HLWKKLLDCIQLTLSAHLEKTYTAK-QERMGLVHRVQEVLDSVDTRRHSN--YS*FKYLM 102
           +LW + + C+  TLS  LE     K QE   ++  ++E  D+   +   +  +  F  L+
Sbjct: 191 YLWTEAIGCLNSTLSVPLESIKLQKVQEAEAILMSLKEEFDNTQNKEKISKLWEEFDSLI 250

Query: 101 ---TKLKN*QVLKGLI 63
               K+K+  V KGLI
Sbjct: 251 PHQIKIKDSTVNKGLI 266


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 266 WKKLLDCIQLTLSAHLEKTYTAKQERMGLVHRVQEVLDSVDTRRHS 129
           W++ LD +   L   LE+   A   R   +H++++  D  D   H+
Sbjct: 525 WRERLDDLLDRLRRKLERARQAPHSRQDCLHQIEDAKDCQDEIEHA 570


>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 379 TANVXFGNGQILGL-VSDVPFE*LQMCP--NLTQCP 281
           T NV +G G++LGL  + + F     CP   LT+CP
Sbjct: 13  TLNVHYGKGKVLGLFYTSLRFSVSINCPYTPLTECP 48


>SB_51996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 245 IQLTLSAHLEKTYTAKQERMGLVHRVQEVL 156
           I+LT S H E+TY     R+G++++++  L
Sbjct: 172 IKLTFSDHAERTYKKIAGRIGVLNKIKGCL 201


>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 132 MPTGINRVQHLLDPVNQTHSLLLRRISFLKMS*KC*LNAIKEFLPK 269
           M T INR+ H +  V+QT     +++  +    +C    + EF+ K
Sbjct: 1   MSTKINRLSHNMQQVDQTFRTWQKQLVLMSRHNRCHDKLLMEFMSK 46


>SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 242  QLTLSAHLEKTYTAKQERMGLVHRVQEVLDS 150
            +LT S H E+TY     R+G++++++  L S
Sbjct: 948  KLTFSDHAERTYKKIAGRIGVLNKIKGCLPS 978


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 314 AANVPKPNTVPRGRHLWKKLLDCIQLTLSAHLEKTYTAKQERMGLVHRVQEV 159
           A N+P   T     HLW+ LL  I L      E    +K E     H + +V
Sbjct: 58  AKNIPLIATRSITTHLWQSLLRAILLAFKYFCELECQSKPENFIARHYIDQV 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,494
Number of Sequences: 59808
Number of extensions: 176310
Number of successful extensions: 315
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)