Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0599.Seq
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 33 0.075
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 33 0.075
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 33 0.075
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 33 0.075
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p... 30 0.70
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ... 30 0.70
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 28 2.8
AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical ... 27 5.0
AF039044-1|AAG24127.1| 272|Caenorhabditis elegans Hypothetical ... 27 6.5
CU457740-11|CAM36341.1| 353|Caenorhabditis elegans Hypothetical... 26 8.7
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 33.1 bits (72), Expect = 0.075
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 314 AANVPKPNTVPRGRHLWKKLLDCIQLT 234
AA+V PN V RHL K++DC+QL+
Sbjct: 587 AASVALPNDVQTNRHLVLKIIDCLQLS 613
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 33.1 bits (72), Expect = 0.075
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 314 AANVPKPNTVPRGRHLWKKLLDCIQLT 234
AA+V PN V RHL K++DC+QL+
Sbjct: 785 AASVALPNDVQTNRHLVLKIIDCLQLS 811
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 33.1 bits (72), Expect = 0.075
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 314 AANVPKPNTVPRGRHLWKKLLDCIQLT 234
AA+V PN V RHL K++DC+QL+
Sbjct: 853 AASVALPNDVQTNRHLVLKIIDCLQLS 879
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 33.1 bits (72), Expect = 0.075
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 314 AANVPKPNTVPRGRHLWKKLLDCIQLT 234
AA+V PN V RHL K++DC+QL+
Sbjct: 785 AASVALPNDVQTNRHLVLKIIDCLQLS 811
>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 29.9 bits (64), Expect = 0.70
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 323 F*IAANVPKPNTVPRGRHLWKKLLDC-IQLTLSA 225
F + AN P+P V G W K LDC I++ L+A
Sbjct: 86 FSLNANWPRPYIVLHGSDFWAKTLDCYIEVPLAA 119
>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 29.9 bits (64), Expect = 0.70
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 323 F*IAANVPKPNTVPRGRHLWKKLLDC-IQLTLSA 225
F + AN P+P V G W K LDC I++ L+A
Sbjct: 86 FSLNANWPRPYIVLHGSDFWAKTLDCYIEVPLAA 119
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 252 KEF-LPKMSSPGHCVRFGHI 308
+EF L M+ PGHC+ FGH+
Sbjct: 362 EEFGLKPMNCPGHCLMFGHM 381
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 252 KEF-LPKMSSPGHCVRFGHI 308
+EF L M+ PGHC+ FGH+
Sbjct: 403 EEFGLKPMNCPGHCLMFGHM 422
>AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical
protein Y73C8C.8 protein.
Length = 946
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 341 FGFRCPF*IAANVPKPNTV 285
FG+RCP + AN PK + V
Sbjct: 526 FGYRCPVCVDANTPKADDV 544
>AF039044-1|AAG24127.1| 272|Caenorhabditis elegans Hypothetical
protein F48G7.13 protein.
Length = 272
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -2
Query: 263 KKLLDCIQLTLSAHLEKTYTAKQERMGLVHRVQEVLD 153
KKL+D QLTLS HLE +T G+ ++QE D
Sbjct: 20 KKLVDTCQLTLS-HLEIAFTFPH---GICLKIQEYSD 52
>CU457740-11|CAM36341.1| 353|Caenorhabditis elegans Hypothetical
protein C50E10.11 protein.
Length = 353
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 366 PLXMAKSWVWFQMSLLNSC 310
PL M ++ W+ M LLN+C
Sbjct: 124 PLFMGGAFTWYYMILLNTC 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,791,763
Number of Sequences: 27780
Number of extensions: 136529
Number of successful extensions: 272
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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