Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0599.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    28   2.6  
At3g59210.1 68416.m06601 F-box family protein contains F-box dom...    27   3.5  

>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 206 YKFSQDELKVLAECNQGVSSKDVFPWA 286
           Y+++ DEL +L E  +G     +F WA
Sbjct: 586 YRYTMDELNLLVEALEGKKLSSMFRWA 612


>At3g59210.1 68416.m06601 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 484

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 230 KVLAECNQGVSSKDVFPWAL 289
           K   +C  G+  +DVFPW L
Sbjct: 89  KFSLKCGDGIEDEDVFPWIL 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,351,787
Number of Sequences: 28952
Number of extensions: 126695
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)